Aliases for ENSG00000227253 Gene

Subcategory (RNA class) for ENSG00000227253 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000227253 Gene

  • Novel Transcript 5
  • HSALNG0077133 169
  • NONHSAG005565 94
  • AL158834.2 5

External Ids for ENSG00000227253 Gene

Previous GeneCards Identifiers for ENSG00000227253 Gene

  • GC10P032555

Summaries for ENSG00000227253 Gene

GeneCards Summary for ENSG00000227253 Gene

ENSG00000227253 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227253 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227253 Gene

Genomics for ENSG00000227253 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227253 Gene

Promoters and enhancers for ENSG00000227253 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J032265 Enhancer 1 UCNEbase Ensembl ENCODE 750.6 +0.7 708 2.2 POU5F1 ZNF316 POLR2A TRIM28 SUPT5H ENSG00000227253 lnc-KIF5B-3 EPC1
GH10J032256 Enhancer 0.7 ENCODE 0.4 -9.5 -9461 0.2 CTCF RBPJ MIXL1 DACH1 RAD21 SP7 CREM ZNF644 REST PRDM10 ENSG00000227253 piR-55648-011
GH10J032263 Enhancer 0.5 Ensembl 0.6 -3.0 -2988 0.6 PRDM10 POLR2A KLF17 FOS KLF1 ENSG00000227253 piR-55648-011
GH10J032253 Enhancer 0.7 Ensembl ENCODE 0.4 -12.8 -12790 1.4 RFX1 DPF2 ZNF366 CTCF FOS KLF1 KIF5B ENSG00000227253 piR-55648-011
GH10J032268 Enhancer 0.3 UCNEbase 0.6 +2.4 2354 0.2 lnc-KIF5B-3 ENSG00000273038 ENSG00000227253 EPC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227253 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227253 Gene

Genomic Locations for ENSG00000227253 Gene
chr10:32,266,289-32,269,474
(GRCh38/hg38)
Size:
3,186 bases
Orientation:
Plus strand
chr10:32,555,217-32,558,402
(GRCh37/hg19)
Size:
3,186 bases
Orientation:
Plus strand

Genomic View for ENSG00000227253 Gene

Genes around ENSG00000227253 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227253 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227253 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227253 Gene

Proteins for ENSG00000227253 Gene

Post-translational modifications for ENSG00000227253 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227253 Gene

Domains & Families for ENSG00000227253 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227253 Gene

Function for ENSG00000227253 Gene

Phenotypes From GWAS Catalog for ENSG00000227253 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227253 Gene

Localization for ENSG00000227253 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227253 Gene

Pathways & Interactions for ENSG00000227253 Gene

PathCards logo

SuperPathways for ENSG00000227253 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000227253 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227253 Gene

Drugs & Compounds for ENSG00000227253 Gene

No Compound Related Data Available

Transcripts for ENSG00000227253 Gene

mRNA/cDNA for ENSG00000227253 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227253 Gene

No ASD Table

Relevant External Links for ENSG00000227253 Gene

GeneLoc Exon Structure for
ENSG00000227253

Expression for ENSG00000227253 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227253 Gene

genes like me logo Genes that share expression patterns with ENSG00000227253: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227253 Gene

Orthologs for ENSG00000227253 Gene

Evolution for ENSG00000227253 Gene

ENSEMBL:
Gene Tree for ENSG00000227253 (if available)
TreeFam:
Gene Tree for ENSG00000227253 (if available)

No data available for Orthologs for ENSG00000227253 Gene

Paralogs for ENSG00000227253 Gene

No data available for Paralogs for ENSG00000227253 Gene

Variants for ENSG00000227253 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227253 Gene

Disorders for ENSG00000227253 Gene

No disorders were found for ENSG00000227253 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227253 Gene

Publications for ENSG00000227253 Gene

No publications were found for ENSG00000227253 Gene.

No data available for External Links for ENSG00000227253 Gene

Products for ENSG00000227253 Gene

Sources for ENSG00000227253 Gene