Aliases for ENSG00000227240 Gene

Subcategory (RNA class) for ENSG00000227240 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000227240 Gene

  • Novel Transcript 5
  • NONHSAG003833 94
  • HSALNG0009338 169
  • Lnc-CDC73-3 170
  • AL136456.1 5

External Ids for ENSG00000227240 Gene

Previous GeneCards Identifiers for ENSG00000227240 Gene

  • GC01P194118

Summaries for ENSG00000227240 Gene

GeneCards Summary for ENSG00000227240 Gene

ENSG00000227240 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227240 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227240 Gene

Genomics for ENSG00000227240 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227240 Gene

Promoters and enhancers for ENSG00000227240 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J193477 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +6.1 6085 4.6 ETV6 MLLT1 IKZF1 IKZF2 PKNOX1 RUNX3 NR2F1 POLR2A HNF4A ENSG00000227240 lnc-CDC73-9 lnc-CDC73-8 LINC01031
GH01J193537 Enhancer 1 FANTOM5 ENCODE 0.2 +66.7 66727 5.3 ZNF24 SP1 JUND ETV6 RELA CREM ZBED1 IKZF1 TRIM22 IKZF2 lnc-CDC73-8 ENSG00000227240 lnc-CDC73-9 ENSG00000226640 LINC01031
GH01J193486 Enhancer 0.4 Ensembl 0.4 +13.7 13677 0.6 MAFK NFE2L2 NFE2 ENSG00000227240 lnc-CDC73-8 lnc-CDC73-9 LINC01031
GH01J193558 Enhancer 0.8 Ensembl ENCODE 0.2 +85.7 85676 3 FOXA1 RAD21 SP1 MAFK RXRA FOXA2 JUND FOS ATF3 YY1 lnc-CDC73-8 ENSG00000227240 ENSG00000226640 LINC01031
GH01J193546 Enhancer 0.7 Ensembl ENCODE 0.2 +75.3 75293 4 SP1 RXRA FOXA2 JUND RAD21 HNF4A HNF4G ZNF146 lnc-CDC73-8 ENSG00000227240 ENSG00000226640 LINC01031
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227240 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227240 Gene

Genomic Locations for ENSG00000227240 Gene
chr1:193,473,224-194,198,708
(GRCh38/hg38)
Size:
725,485 bases
Orientation:
Plus strand
chr1:194,118,603-194,167,824
(GRCh37/hg19)
Size:
49,222 bases
Orientation:
Plus strand

Genomic View for ENSG00000227240 Gene

Genes around ENSG00000227240 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227240 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227240 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227240 Gene

Proteins for ENSG00000227240 Gene

Post-translational modifications for ENSG00000227240 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227240 Gene

Domains & Families for ENSG00000227240 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227240 Gene

Function for ENSG00000227240 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227240 Gene

Localization for ENSG00000227240 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227240 Gene

Pathways & Interactions for ENSG00000227240 Gene

PathCards logo

SuperPathways for ENSG00000227240 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000227240 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227240 Gene

Drugs & Compounds for ENSG00000227240 Gene

No Compound Related Data Available

Transcripts for ENSG00000227240 Gene

mRNA/cDNA for ENSG00000227240 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LNCipedia transcripts :
(2) NONCODE transcripts :
(2) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227240 Gene

No ASD Table

Relevant External Links for ENSG00000227240 Gene

GeneLoc Exon Structure for
ENSG00000227240

Expression for ENSG00000227240 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227240 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227240 Gene

This gene is overexpressed in Liver (x32.6) and Small Intestine - Terminal Ileum (x5.8).
genes like me logo Genes that share expression patterns with ENSG00000227240: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227240 Gene

Orthologs for ENSG00000227240 Gene

Evolution for ENSG00000227240 Gene

ENSEMBL:
Gene Tree for ENSG00000227240 (if available)
TreeFam:
Gene Tree for ENSG00000227240 (if available)

No data available for Orthologs for ENSG00000227240 Gene

Paralogs for ENSG00000227240 Gene

No data available for Paralogs for ENSG00000227240 Gene

Variants for ENSG00000227240 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227240 Gene

Disorders for ENSG00000227240 Gene

No disorders were found for ENSG00000227240 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227240 Gene

Publications for ENSG00000227240 Gene

No publications were found for ENSG00000227240 Gene.

No data available for External Links for ENSG00000227240 Gene

Products for ENSG00000227240 Gene

Sources for ENSG00000227240 Gene