Aliases for ENSG00000227227 Gene

Subcategory (RNA class) for ENSG00000227227 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000227227 Gene

  • Novel Transcript 5
  • NONHSAG030057 92
  • HSALNG0020976 167
  • Lnc-ZSWIM2-1 168
  • AC017101.1 5

External Ids for ENSG00000227227 Gene

Previous GeneCards Identifiers for ENSG00000227227 Gene

  • GC02M187506

Summaries for ENSG00000227227 Gene

GeneCards Summary for ENSG00000227227 Gene

ENSG00000227227 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227227 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227227 Gene

Genomics for ENSG00000227227 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227227 Gene

Promoters and enhancers for ENSG00000227227 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J186693 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 +0.2 186 3.8 NRF1 TCF12 USF1 PHF8 ZFX ZNF639 ZBTB10 ZBTB26 TRIM28 SAP30 FAM171B ENSG00000227227 ITGAV TFPI
GH02J186574 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.3 +119.3 119337 2.9 TCF12 JUND FOS REST TRIM28 SKI TEAD1 ZEB1 HDAC3 NCOR1 ITGAV ENSG00000227227 FAM171B ENSG00000259915 MED28P3 lnc-ZSWIM2-16 piR-57134-071
GH02J186641 Enhancer 0.7 ENCODE 11.5 +53.4 53368 0.2 CTCF JUND TEAD4 REST RFX1 RAD21 MYC TRIM22 TEAD1 SMC3 ENSG00000227227 FAM171B ITGAV piR-61945-289 lnc-ZSWIM2-16
GH02J186717 Enhancer 0.7 Ensembl CraniofacialAtlas 12.1 -23.3 -23250 2.5 EP300 MXI1 CBX2 SIN3A SMARCA4 PKNOX1 POLR2A FAM171B ENSG00000227227 TFPI ZSWIM2
GH02J186572 Enhancer 0.8 Ensembl ENCODE 10.3 +121.9 121924 1.9 TCF12 FOS FOSL2 ATF3 NR3C1 NFIB JUND YY1 ZBTB33 BCL3 ENSG00000227227 FAM171B ENSG00000259915 piR-57134-071 ITGAV lnc-ZSWIM2-16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227227 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227227 Gene

Genomic Locations for ENSG00000227227 Gene
chr2:186,641,339-186,695,287
(GRCh38/hg38)
Size:
53,949 bases
Orientation:
Minus strand
chr2:187,506,066-187,560,014
(GRCh37/hg19)
Size:
53,949 bases
Orientation:
Minus strand

Genomic View for ENSG00000227227 Gene

Genes around ENSG00000227227 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227227 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227227 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227227 Gene

Proteins for ENSG00000227227 Gene

Post-translational modifications for ENSG00000227227 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227227 Gene

Domains & Families for ENSG00000227227 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227227 Gene

Function for ENSG00000227227 Gene

Phenotypes From GWAS Catalog for ENSG00000227227 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227227 Gene

Localization for ENSG00000227227 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227227 Gene

Pathways & Interactions for ENSG00000227227 Gene

PathCards logo

SuperPathways for ENSG00000227227 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000227227 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000227227 Gene

Drugs & Compounds for ENSG00000227227 Gene

No Compound Related Data Available

Transcripts for ENSG00000227227 Gene

mRNA/cDNA for ENSG00000227227 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227227 Gene

No ASD Table

Relevant External Links for ENSG00000227227 Gene

GeneLoc Exon Structure for
ENSG00000227227

Expression for ENSG00000227227 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000227227 Gene

genes like me logo Genes that share expression patterns with ENSG00000227227: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227227 Gene

Orthologs for ENSG00000227227 Gene

Evolution for ENSG00000227227 Gene

ENSEMBL:
Gene Tree for ENSG00000227227 (if available)
TreeFam:
Gene Tree for ENSG00000227227 (if available)

No data available for Orthologs for ENSG00000227227 Gene

Paralogs for ENSG00000227227 Gene

No data available for Paralogs for ENSG00000227227 Gene

Variants for ENSG00000227227 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227227 Gene

Disorders for ENSG00000227227 Gene

No disorders were found for ENSG00000227227 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227227 Gene

Publications for ENSG00000227227 Gene

No publications were found for ENSG00000227227 Gene.

No data available for Mastermind for ENSG00000227227 Gene

Products for ENSG00000227227 Gene

Sources for ENSG00000227227 Gene