Aliases for ENSG00000227175 Gene

Subcategory (RNA class) for ENSG00000227175 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000227175 Gene

  • Novel Transcript 5
  • NONHSAG005270 94
  • Lnc-PRPF18-3 170
  • AL590677.1 5

External Ids for ENSG00000227175 Gene

Previous GeneCards Identifiers for ENSG00000227175 Gene

  • GC10P013570

Summaries for ENSG00000227175 Gene

GeneCards Summary for ENSG00000227175 Gene

ENSG00000227175 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227175 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227175 Gene

Genomics for ENSG00000227175 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227175 Gene

Promoters and enhancers for ENSG00000227175 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J013526 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 750.6 -0.2 -215 3.4 NR2F6 HLF ZFX MAFK PRDM1 ZNF639 GLIS2 ZIC2 RNF2 ZBTB8A BEND7 ENSG00000227175 LOC105376421 lnc-BEND7-5 piR-43355
GH10J013439 Promoter/Enhancer 1.1 ENCODE CraniofacialAtlas 12.1 -88.0 -87960 0.3 CTCF L3MBTL2 RAD21 TFE3 SP7 KLF14 GLIS2 ZIC2 REST ZBTB8A BEND7 ENSG00000227175 SEPHS1 lnc-PRPF18-13 RF00017-594 lnc-BEND7-1
GH10J013557 Enhancer 0.9 Ensembl ENCODE 12.2 +28.4 28364 1.4 SMARCE1 ZNF362 BCL6B SP7 SMARCA4 PRDM1 PKNOX1 CREB1 RFX1 ZNF639 ENSG00000239665 BEND7 ENSG00000227175 PRPF18 LOC105376422 piR-53177-005
GH10J013525 Enhancer 0.8 UCNEbase Ensembl 0.6 -2.7 -2684 0.3 MAFK ZNF316 MAFG MAFF EMSY piR-43355 piR-50437-038 ENSG00000227175 BEND7 lnc-BEND7-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227175 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227175 Gene

Genomic Locations for ENSG00000227175 Gene
chr10:13,528,516-13,530,262
(GRCh38/hg38)
Size:
1,747 bases
Orientation:
Plus strand
chr10:13,570,516-13,572,262
(GRCh37/hg19)
Size:
1,747 bases
Orientation:
Plus strand

Genomic View for ENSG00000227175 Gene

Genes around ENSG00000227175 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227175 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227175 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227175 Gene

Proteins for ENSG00000227175 Gene

Post-translational modifications for ENSG00000227175 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227175 Gene

Domains & Families for ENSG00000227175 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227175 Gene

Function for ENSG00000227175 Gene

Phenotypes From GWAS Catalog for ENSG00000227175 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227175 Gene

Localization for ENSG00000227175 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227175 Gene

Pathways & Interactions for ENSG00000227175 Gene

PathCards logo

SuperPathways for ENSG00000227175 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000227175 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227175 Gene

Drugs & Compounds for ENSG00000227175 Gene

No Compound Related Data Available

Transcripts for ENSG00000227175 Gene

mRNA/cDNA for ENSG00000227175 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(1) LNCipedia transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227175 Gene

No ASD Table

Relevant External Links for ENSG00000227175 Gene

GeneLoc Exon Structure for
ENSG00000227175

Expression for ENSG00000227175 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227175 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227175 Gene

This gene is overexpressed in Testis (x33.7).
genes like me logo Genes that share expression patterns with ENSG00000227175: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227175 Gene

Orthologs for ENSG00000227175 Gene

Evolution for ENSG00000227175 Gene

ENSEMBL:
Gene Tree for ENSG00000227175 (if available)
TreeFam:
Gene Tree for ENSG00000227175 (if available)

No data available for Orthologs for ENSG00000227175 Gene

Paralogs for ENSG00000227175 Gene

No data available for Paralogs for ENSG00000227175 Gene

Variants for ENSG00000227175 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227175 Gene

Disorders for ENSG00000227175 Gene

No disorders were found for ENSG00000227175 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227175 Gene

Publications for ENSG00000227175 Gene

No publications were found for ENSG00000227175 Gene.

No data available for External Links for ENSG00000227175 Gene

Products for ENSG00000227175 Gene

Sources for ENSG00000227175 Gene