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Aliases for ENSG00000227172 Gene

Quality Score for this RNA gene is

13

Aliases for ENSG00000227172 Gene

  • Novel Transcript, Antisense To POU6F2 5
  • AC011290.1 5

External Ids for ENSG00000227172 Gene

Previous GeneCards Identifiers for ENSG00000227172 Gene

  • GC07M039585

Summaries for ENSG00000227172 Gene

GeneCards Summary for ENSG00000227172 Gene

ENSG00000227172 is an RNA Gene.

Additional gene information for ENSG00000227172 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000227172 Gene

Genomics for ENSG00000227172 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227172 Gene

Promoters and enhancers for ENSG00000227172 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J039565 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 -0.5 -462 2.6 CC2D1A ZFX NKRF POLR2A MLLT1 CEBPG ZNF687 ZSCAN21 AHR ZBTB7A ENSG00000227172 LOC105375240 YAE1 LINC00265 RALA ENSG00000236015 LOC100101126
GH07J039732 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE 11.3 -167.9 -167865 3.6 SP1 ZFX ELF3 CBFA2T2 ZNF148 POLR2A CSDE1 ZNF687 FOS MAFK LINC00265 CDK13 CICP22 ENSG00000228554 RALA ENSG00000227172 YAE1 MPLKIP RNU6-719P
GH07J039588 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 11.6 -23.6 -23561 3.3 SP1 CC2D1A ZKSCAN8 CBFA2T2 MLLT1 BACH1 JUND TRIM24 RELA SP7 RALA ENSG00000227172 YAE1 CDK13 LINC00265 GC07P039582 GC07P039609
GH07J039607 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 11 -43.1 -43125 4.5 PRDM1 SMARCA4 MTA1 POLR2A HDAC1 SOX6 MGA GABPA EP300 STAT1 ENSG00000106540 ENSG00000231951 GC07P039609 LOC646999 YAE1 ENSG00000227172 RALA GC07P039582
GH07J039735 Promoter/Enhancer 1.2 Ensembl ENCODE 11.3 -169.8 -169843 0.2 CBFA2T2 MLLT1 SMARCA4 ZIC2 ZNF629 HDAC1 CBFB CTBP1 OSR2 RUNX3 RALA ENSG00000227172 YAE1 LINC00265 RNU6-719P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227172 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227172 Gene

Genomic Locations for ENSG00000227172 Gene
chr7:39,545,646-39,566,239
(GRCh38/hg38)
Size:
20,594 bases
Orientation:
Minus strand
chr7:39,585,245-39,605,838
(GRCh37/hg19)
Size:
20,594 bases
Orientation:
Minus strand

Genomic View for ENSG00000227172 Gene

Genes around ENSG00000227172 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227172 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227172 Gene

Proteins for ENSG00000227172 Gene

Post-translational modifications for ENSG00000227172 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227172 Gene

Domains & Families for ENSG00000227172 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000227172 Gene

Function for ENSG00000227172 Gene

Phenotypes From GWAS Catalog for ENSG00000227172 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227172 Gene

Localization for ENSG00000227172 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227172 Gene

Pathways & Interactions for ENSG00000227172 Gene

PathCards logo

SuperPathways for ENSG00000227172 Gene

No Data Available

Interacting Proteins for ENSG00000227172 Gene

Gene Ontology (GO) - Biological Process for ENSG00000227172 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227172 Gene

Drugs & Compounds for ENSG00000227172 Gene

No Compound Related Data Available

Transcripts for ENSG00000227172 Gene

mRNA/cDNA for ENSG00000227172 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227172 Gene

No ASD Table

Relevant External Links for ENSG00000227172 Gene

GeneLoc Exon Structure for
ENSG00000227172

Expression for ENSG00000227172 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227172 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227172 Gene

This gene is overexpressed in Testis (x16.0) and Brain - Spinal cord (cervical c-1) (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000227172: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227172 Gene

Orthologs for ENSG00000227172 Gene

Evolution for ENSG00000227172 Gene

ENSEMBL:
Gene Tree for ENSG00000227172 (if available)
TreeFam:
Gene Tree for ENSG00000227172 (if available)

No data available for Orthologs for ENSG00000227172 Gene

Paralogs for ENSG00000227172 Gene

No data available for Paralogs for ENSG00000227172 Gene

Variants for ENSG00000227172 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227172 Gene

Disorders for ENSG00000227172 Gene

No disorders were found for ENSG00000227172 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227172 Gene

Publications for ENSG00000227172 Gene

No publications were found for ENSG00000227172 Gene.

No data available for External Links for ENSG00000227172 Gene

Products for ENSG00000227172 Gene

Sources for ENSG00000227172 Gene

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