Aliases for ENSG00000227094 Gene

Subcategory (RNA class) for ENSG00000227094 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000227094 Gene

  • Novel Transcript 5
  • Lnc-SPATA46-1 168
  • HSALNG0007993 167
  • NONHSAG003284 92
  • AL512785.1 5

External Ids for ENSG00000227094 Gene

Previous GeneCards Identifiers for ENSG00000227094 Gene

  • GC01M162286

Summaries for ENSG00000227094 Gene

GeneCards Summary for ENSG00000227094 Gene

ENSG00000227094 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227094 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227094 Gene

Genomics for ENSG00000227094 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227094 Gene

Promoters and enhancers for ENSG00000227094 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J162319 Enhancer 0.6 Ensembl ENCODE 500.7 0.0 -14 5.2 RBM22 SPI1 ZFHX2 ATF2 EGR2 ZNF24 ENSG00000227094 piR-32559-024 piR-60246-011 lnc-C1orf226-1 lnc-SPATA46-2 NOS1AP
GH01J162246 Enhancer 1.3 FANTOM5 Ensembl ENCODE 11.1 +68.8 68825 5.1 EP300 FOXK2 NCOR1 KDM6A TCF7 ZNF510 RFX1 ZBTB25 SKI SMARCC2 C1orf226 ENSG00000227094 SH2D1B SPATA46 NOS1AP lnc-SPATA46-3 piR-36756-007
GH01J162411 Promoter/Enhancer 1 EPDnew Ensembl ENCODE 10 -95.1 -95107 2.6 ZNF592 ELF4 LARP7 MAX USF1 ETV6 ZNF24 ELF1 SH2D1B lnc-SH2D1B-2 C1orf226 SPATA46 ENSG00000227094 SLAMF6P1 piR-58297-030
GH01J162239 Enhancer 0.7 Ensembl 10.5 +77.5 77493 1.8 CTCF TEAD1 FOXA2 ZNF195 POLR2A JUND CREM GATA3 FOXA1 ZMYM3 ENSG00000227094 lnc-SPATA46-3 piR-36756-007 NOS1AP
GH01J162292 Enhancer 0.5 Ensembl 12.1 +24.3 24293 3 RFX1 NFIC CEBPB POLR2A NFIB JUN ZNF677 ZNF366 PRDM10 BMI1 C1orf226 ENSG00000227094 MIR556 SPATA46 NOS1AP piR-32559-024 piR-38562-006
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227094 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227094 Gene

Genomic Locations for ENSG00000227094 Gene
chr1:162,316,852-162,317,794
(GRCh38/hg38)
Size:
943 bases
Orientation:
Minus strand
chr1:162,286,642-162,287,584
(GRCh37/hg19)
Size:
943 bases
Orientation:
Minus strand

Genomic View for ENSG00000227094 Gene

Genes around ENSG00000227094 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227094 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227094 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227094 Gene

Proteins for ENSG00000227094 Gene

Post-translational modifications for ENSG00000227094 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227094 Gene

Domains & Families for ENSG00000227094 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227094 Gene

Function for ENSG00000227094 Gene

Phenotypes From GWAS Catalog for ENSG00000227094 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227094 Gene

Localization for ENSG00000227094 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227094 Gene

Pathways & Interactions for ENSG00000227094 Gene

PathCards logo

SuperPathways for ENSG00000227094 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000227094 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000227094 Gene

Drugs & Compounds for ENSG00000227094 Gene

No Compound Related Data Available

Transcripts for ENSG00000227094 Gene

mRNA/cDNA for ENSG00000227094 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227094 Gene

No ASD Table

Relevant External Links for ENSG00000227094 Gene

GeneLoc Exon Structure for
ENSG00000227094

Expression for ENSG00000227094 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000227094 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227094 Gene

This gene is overexpressed in Testis (x13.2) and Kidney - Cortex (x12.4).
genes like me logo Genes that share expression patterns with ENSG00000227094: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227094 Gene

Orthologs for ENSG00000227094 Gene

Evolution for ENSG00000227094 Gene

ENSEMBL:
Gene Tree for ENSG00000227094 (if available)
TreeFam:
Gene Tree for ENSG00000227094 (if available)

No data available for Orthologs for ENSG00000227094 Gene

Paralogs for ENSG00000227094 Gene

No data available for Paralogs for ENSG00000227094 Gene

Variants for ENSG00000227094 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227094 Gene

Disorders for ENSG00000227094 Gene

No disorders were found for ENSG00000227094 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227094 Gene

Publications for ENSG00000227094 Gene

No publications were found for ENSG00000227094 Gene.

No data available for Mastermind for ENSG00000227094 Gene

Products for ENSG00000227094 Gene

Sources for ENSG00000227094 Gene