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Aliases for ENSG00000227048 Gene

Subcategory (RNA class) for ENSG00000227048 Gene

lncRNA

Aliases for ENSG00000227048 Gene

  • AC096677.3 5

External Ids for ENSG00000227048 Gene

ORGUL Members for ENSG00000227048 Gene

Previous GeneCards Identifiers for ENSG00000227048 Gene

  • GC01P201398

Summaries for ENSG00000227048 Gene

GeneCards Summary for ENSG00000227048 Gene

ENSG00000227048 is an Uncategorized gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ENSG00000227048 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for ENSG00000227048

Additional gene information for ENSG00000227048 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000227048 Gene

Genomics for ENSG00000227048 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227048 Gene

Promoters and enhancers for ENSG00000227048 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J201419 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 0.7 -3.5 -3523 12.8 HDGF BCOR ZSCAN4 ZMYM3 EBF1 RELA ZNF664 ZFHX2 POLR2A VEZF1 TNNI1 TNNT2 ENSG00000224818 RPS10P7 ENSG00000227048 LOC101929367 LAD1
GH01J201403 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -23.2 -23183 4 HDGF MLX ARID4B DMAP1 ZNF48 ZNF143 ATF7 RUNX3 NFKBIZ RXRA TNNI1 PKP1 LAD1 ENSG00000227048
GH01J201409 Enhancer 1 ENCODE dbSUPER 0.3 -20.6 -20577 0.2 HDGF CTCF ATF1 RB1 ZBTB21 ARID4B ZBTB7B RAD21 TEAD3 ZBTB48 PKP1 LAD1 ENSG00000227048 TNNI1
GH01J201408 Enhancer 0.9 ENCODE dbSUPER 0.3 -20.7 -20673 0 HDGF CTCF RB1 ARID4B ZBTB7B RAD21 TEAD3 PATZ1 IKZF5 ZNF143 PKP1 TNNI1 LAD1 ENSG00000227048
GH01J201416 Enhancer 0.2 dbSUPER 0.4 -11.6 -11562 1.6 ENSG00000224818 PHLDA3 ENSG00000227048 TNNI1 LAD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227048 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227048 Gene

Genomic Locations for ENSG00000227048 Gene
chr1:201,428,975-201,429,361
(GRCh38/hg38)
Size:
387 bases
Orientation:
Plus strand
chr1:201,398,103-201,398,489
(GRCh37/hg19)
Size:
387 bases
Orientation:
Plus strand

Genomic View for ENSG00000227048 Gene

Genes around ENSG00000227048 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227048 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227048 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000227048 Gene

ORGUL Member Location for ENSG00000227048 gene

No data available for RefSeq DNA sequence for ENSG00000227048 Gene

Proteins for ENSG00000227048 Gene

Post-translational modifications for ENSG00000227048 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227048 Gene

Domains & Families for ENSG00000227048 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000227048 Gene

Function for ENSG00000227048 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227048 Gene

Localization for ENSG00000227048 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227048 Gene

Pathways & Interactions for ENSG00000227048 Gene

SuperPathways for ENSG00000227048 Gene

No Data Available

Interacting Proteins for ENSG00000227048 Gene

Gene Ontology (GO) - Biological Process for ENSG00000227048 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227048 Gene

Drugs & Compounds for ENSG00000227048 Gene

No Compound Related Data Available

Transcripts for ENSG00000227048 Gene

fRNAdb Secondary structures for ENSG00000227048 Gene

  • FR392128

mRNA/cDNA for ENSG00000227048 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227048 Gene

No ASD Table

Relevant External Links for ENSG00000227048 Gene

GeneLoc Exon Structure for
ENSG00000227048

Expression for ENSG00000227048 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227048 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227048 Gene

This gene is overexpressed in Muscle - Skeletal (x51.2).
genes like me logo Genes that share expression patterns with ENSG00000227048: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227048 Gene

Orthologs for ENSG00000227048 Gene

Evolution for ENSG00000227048 Gene

ENSEMBL:
Gene Tree for ENSG00000227048 (if available)
TreeFam:
Gene Tree for ENSG00000227048 (if available)

No data available for Orthologs for ENSG00000227048 Gene

Paralogs for ENSG00000227048 Gene

No data available for Paralogs for ENSG00000227048 Gene

Variants for ENSG00000227048 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227048 Gene

Disorders for ENSG00000227048 Gene

No disorders were found for ENSG00000227048 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227048 Gene

Publications for ENSG00000227048 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for ENSG00000227048 Gene

Sources for ENSG00000227048 Gene

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