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Aliases for ENSG00000227040 Gene

Subcategory (RNA class) for ENSG00000227040 Gene

lncRNA

Aliases for ENSG00000227040 Gene

  • Thioredoxin Domain Containing 9 (TXNDC9) Pseudogene 5
  • AC022483.1 5

External Ids for ENSG00000227040 Gene

ORGUL Members for ENSG00000227040 Gene

Previous GeneCards Identifiers for ENSG00000227040 Gene

  • GC04M057627

Summaries for ENSG00000227040 Gene

GeneCards Summary for ENSG00000227040 Gene

ENSG00000227040 is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227040 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000227040 Gene

Genomics for ENSG00000227040 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227040 Gene

Promoters and enhancers for ENSG00000227040 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J056762 Enhancer 0.3 Ensembl 600.7 -1.0 -1016 0.2 CTCF ENSG00000227040 LOC285453 GC04M056796 RN7SL492P
GH04J056757 Enhancer 1 FANTOM5 ENCODE 0.7 +3.5 3516 2.6 ZNF148 CREM ZBED1 IKZF1 POLR2A IKZF2 CBFB SCRT2 EED RUNX3 AASDH ENSG00000227040 PIR42353
GH04J056742 Enhancer 1 Ensembl ENCODE 0.4 +17.7 17744 3.5 MZF1 ZBTB8A ATF7 TCF7L2 ZNF501 ZNF561 ZXDB OSR2 TSHZ1 ZNF580 HOPX ENSG00000269921 ENSG00000251799 SPINK2 ENSG00000227040 PIR42353
GH04J056753 Enhancer 0.7 Ensembl ENCODE 0.4 +8.5 8462 0.4 CTBP1 ZNF217 DPF2 NFIB SMARCE1 HOPX SPINK2 ENSG00000251799 ENSG00000227040 PIR42353
GH04J056728 Enhancer 0.9 Ensembl ENCODE 0.3 +32.9 32940 1.1 SP1 ZNF692 ZBTB44 ZXDB ZSCAN5C OSR2 GABPA NFIC ZNF18 ZNF335 HOPX ENSG00000251799 SPINK2 PIR42353 ENSG00000227040
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227040 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227040 Gene

Genomic Locations for ENSG00000227040 Gene
chr4:56,760,919-56,761,485
(GRCh38/hg38)
Size:
567 bases
Orientation:
Minus strand

Genomic View for ENSG00000227040 Gene

Genes around ENSG00000227040 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227040 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227040 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227040 Gene

Proteins for ENSG00000227040 Gene

Post-translational modifications for ENSG00000227040 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227040 Gene

Domains & Families for ENSG00000227040 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000227040 Gene

Function for ENSG00000227040 Gene

Phenotypes From GWAS Catalog for ENSG00000227040 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227040 Gene

Localization for ENSG00000227040 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227040 Gene

Pathways & Interactions for ENSG00000227040 Gene

PathCards logo

SuperPathways for ENSG00000227040 Gene

No Data Available

Interacting Proteins for ENSG00000227040 Gene

Gene Ontology (GO) - Biological Process for ENSG00000227040 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227040 Gene

Drugs & Compounds for ENSG00000227040 Gene

No Compound Related Data Available

Transcripts for ENSG00000227040 Gene

mRNA/cDNA for ENSG00000227040 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227040 Gene

No ASD Table

Relevant External Links for ENSG00000227040 Gene

GeneLoc Exon Structure for
ENSG00000227040

Expression for ENSG00000227040 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227040 Gene

Orthologs for ENSG00000227040 Gene

Evolution for ENSG00000227040 Gene

ENSEMBL:
Gene Tree for ENSG00000227040 (if available)
TreeFam:
Gene Tree for ENSG00000227040 (if available)

No data available for Orthologs for ENSG00000227040 Gene

Paralogs for ENSG00000227040 Gene

No data available for Paralogs for ENSG00000227040 Gene

Variants for ENSG00000227040 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227040 Gene

Disorders for ENSG00000227040 Gene

No disorders were found for ENSG00000227040 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227040 Gene

Publications for ENSG00000227040 Gene

No publications were found for ENSG00000227040 Gene.

No data available for External Links for ENSG00000227040 Gene

Products for ENSG00000227040 Gene

Sources for ENSG00000227040 Gene

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