Aliases for ENSG00000227006 Gene

Subcategory (RNA class) for ENSG00000227006 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000227006 Gene

  • Novel Transcript 5
  • NONHSAG004581 94
  • HSALNG0011366 169
  • Lnc-PGBD5-2 170
  • AL136988.2 5

External Ids for ENSG00000227006 Gene

Previous GeneCards Identifiers for ENSG00000227006 Gene

  • GC01M230394

Summaries for ENSG00000227006 Gene

GeneCards Summary for ENSG00000227006 Gene

ENSG00000227006 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000227006 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000227006 Gene

Genomics for ENSG00000227006 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000227006 Gene

Promoters and enhancers for ENSG00000227006 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J230270 Enhancer 1 FANTOM5 ENCODE dbSUPER 750.6 -0.3 -345 4.4 ETV6 ZNF121 CREM SCRT2 EED SCRT1 RUNX3 NR2C2 GABPA NR2F2 ENSG00000227006 ENSG00000227934 GALNT2 ENSG00000224407
GH01J230266 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.6 +3.8 3789 2.8 ZNF785 CTCF ZNF362 CC2D1A RAD21 ZNF121 ZNF384 SP7 ZSCAN21 PRDM1 ENSG00000226920 GALNT2 NUP133 ARV1 ENSG00000227006 lnc-PGBD5-4
GH01J230276 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -5.7 -5701 3.6 CTCF POU5F1 SP1 PKNOX1 POLR2A SCRT2 RUNX3 USF1 SIN3A GALNT2 ENSG00000224407 ENSG00000227006
GH01J230249 Enhancer 0.7 Ensembl dbSUPER 0.3 +21.1 21100 2.8 CREM CBFB RUNX3 ZKSCAN1 JUNB STAT5A BATF IRF4 ATF2 NFATC1 GALNT2 ENSG00000224407 ENSG00000227934 lnc-PGBD5-4 ENSG00000227006 lnc-COG2-4-002
GH01J230247 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.3 +23.9 23938 1.4 SCRT2 SCRT1 lnc-PGBD5-4 ENSG00000224407 GALNT2 ENSG00000227934 ENSG00000227006 lnc-COG2-4-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000227006 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000227006 Gene

Genomic Locations for ENSG00000227006 Gene
chr1:230,258,694-230,272,100
(GRCh38/hg38)
Size:
13,407 bases
Orientation:
Minus strand
chr1:230,394,440-230,404,229
(GRCh37/hg19)
Size:
9,790 bases
Orientation:
Minus strand

Genomic View for ENSG00000227006 Gene

Genes around ENSG00000227006 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000227006 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000227006 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000227006 Gene

Proteins for ENSG00000227006 Gene

Post-translational modifications for ENSG00000227006 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000227006 Gene

Domains & Families for ENSG00000227006 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000227006 Gene

Function for ENSG00000227006 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000227006 Gene

Localization for ENSG00000227006 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000227006 Gene

Pathways & Interactions for ENSG00000227006 Gene

PathCards logo

SuperPathways for ENSG00000227006 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000227006 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000227006 Gene

Drugs & Compounds for ENSG00000227006 Gene

No Compound Related Data Available

Transcripts for ENSG00000227006 Gene

mRNA/cDNA for ENSG00000227006 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(4) LNCipedia transcripts :
(4) LncBook transcripts :
(6) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000227006 Gene

No ASD Table

Relevant External Links for ENSG00000227006 Gene

GeneLoc Exon Structure for
ENSG00000227006

Expression for ENSG00000227006 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000227006 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000227006 Gene

This gene is overexpressed in Testis (x17.5).
genes like me logo Genes that share expression patterns with ENSG00000227006: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000227006 Gene

Orthologs for ENSG00000227006 Gene

Evolution for ENSG00000227006 Gene

ENSEMBL:
Gene Tree for ENSG00000227006 (if available)
TreeFam:
Gene Tree for ENSG00000227006 (if available)

No data available for Orthologs for ENSG00000227006 Gene

Paralogs for ENSG00000227006 Gene

No data available for Paralogs for ENSG00000227006 Gene

Variants for ENSG00000227006 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000227006 Gene

Disorders for ENSG00000227006 Gene

No disorders were found for ENSG00000227006 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000227006 Gene

Publications for ENSG00000227006 Gene

No publications were found for ENSG00000227006 Gene.

No data available for External Links for ENSG00000227006 Gene

Products for ENSG00000227006 Gene

Sources for ENSG00000227006 Gene