Aliases for ENSG00000226853 Gene

Subcategory (RNA class) for ENSG00000226853 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000226853 Gene

  • Novel Transcript 5
  • NONHSAG029869.2 91
  • HSALNG0020496 164
  • Lnc-SCRN3-1 165
  • AC010894.2 5

External Ids for ENSG00000226853 Gene

Previous GeneCards Identifiers for ENSG00000226853 Gene

  • GC02P175352

Summaries for ENSG00000226853 Gene

GeneCards Summary for ENSG00000226853 Gene

ENSG00000226853 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000226853 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000226853 Gene

Genomics for ENSG00000226853 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000226853 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J174485 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.6 -644 3.4 RNF2 HNRNPL PRDM10 TFE3 IKZF1 ZNF692 POLR2A BACH1 ZHX2 LARP7 GPR155 ENSG00000226853 LOC105373748 lnc-WIPF1-2 WIPF1 piR-43107-164 SCRN3
GH02J174524 Enhancer 0.6 Ensembl 11.8 +36.7 36666 5.6 CEBPG CREB1 CTCF REST RAD21 SMC3 SPI1 ZNF384 CEBPB ATF2 WIPF1 SP3 GPR155 ENSG00000226853 RNU6-5P HSALNG0020499 RF00017-3370
GH02J174488 Enhancer 0.4 ENCODE 0.7 +2.5 2493 2 RUNX3 EBF1 ZBTB33 lnc-GPR155-1 lnc-SCRN3-6 WIPF1 GPR155 ENSG00000226853 LOC105373748 SCRN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000226853 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000226853 Gene

Genomic Locations for ENSG00000226853 Gene
chr2:174,487,335-174,490,308
(GRCh38/hg38)
Size:
2,974 bases
Orientation:
Plus strand
chr2:175,352,117-175,353,114
(GRCh37/hg19)
Size:
998 bases
Orientation:
Plus strand

Genomic View for ENSG00000226853 Gene

Genes around ENSG00000226853 on UCSC Golden Path with GeneCards custom track
ENSG00000226853 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000226853 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000226853 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000226853 Gene

Proteins for ENSG00000226853 Gene

Post-translational modifications for ENSG00000226853 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000226853 Gene

Domains & Families for ENSG00000226853 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000226853 Gene

Function for ENSG00000226853 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000226853 Gene

Localization for ENSG00000226853 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000226853 Gene

Pathways & Interactions for ENSG00000226853 Gene

PathCards logo

SuperPathways for ENSG00000226853 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000226853 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000226853 Gene

Drugs & Compounds for ENSG00000226853 Gene

No Compound Related Data Available

Transcripts for ENSG00000226853 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000226853 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004112A4_9606 lncRNA 561 4

Ensembl: ENST00000444196 (view in UCSC) ,

LncBook: HSALNT0043361,

LNCipedia: lnc-SCRN3-1:1,

NONCODE: NONHSAT075566.2,

URS0000316F62_9606 lncRNA 499 3

Ensembl: ENST00000606406 (view in UCSC) ,

LNCipedia: lnc-SCRN3-1:4,

NONCODE: NONHSAT183106.1,

URS000051FD88_9606 lncRNA 393 3

Ensembl: ENST00000417038 (view in UCSC) ,

LncBook: HSALNT0043363,

LNCipedia: lnc-SCRN3-1:2,

URS0000EF46FF_9606 lncRNA 414 1

Ensembl: ENST00000661056 (view in UCSC) ,

URS0000D5DBA8_9606 lncRNA 2346 2

LncBook: HSALNT0043357,

LNCipedia: lnc-SCRN3-1:10,

ENSG00000226853 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000226853 Gene

No ASD Table

Relevant External Links for ENSG00000226853 Gene

GeneLoc Exon Structure for
ENSG00000226853

No data available for mRNA/cDNA for ENSG00000226853 Gene

Expression for ENSG00000226853 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000226853 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000226853 Gene

This gene is overexpressed in Testis (x10.7).
genes like me logo Genes that share expression patterns with ENSG00000226853: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000226853 Gene

Orthologs for ENSG00000226853 Gene

Evolution for ENSG00000226853 Gene

ENSEMBL:
Gene Tree for ENSG00000226853 (if available)
TreeFam:
Gene Tree for ENSG00000226853 (if available)

No data available for Orthologs for ENSG00000226853 Gene

Paralogs for ENSG00000226853 Gene

No data available for Paralogs for ENSG00000226853 Gene

Variants for ENSG00000226853 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000226853 Gene

Disorders for ENSG00000226853 Gene

Additional Disease Information for ENSG00000226853

No disorders were found for ENSG00000226853 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000226853 Gene

Publications for ENSG00000226853 Gene

No publications were found for ENSG00000226853 Gene.

No data available for Mastermind for ENSG00000226853 Gene

Products for ENSG00000226853 Gene

Sources for ENSG00000226853 Gene