Aliases for ENSG00000226643 Gene

Data sources for ENSG00000226643 Gene:

Subcategory (RNA class) for ENSG00000226643 Gene

lncRNA

Aliases for ENSG00000226643 Gene

External Ids for ENSG00000226643 Gene

Previous GeneCards Identifiers for ENSG00000226643 Gene

  • GC01M222626

Summaries for ENSG00000226643 Gene

GeneCards Summary for ENSG00000226643 Gene

ENSG00000226643 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000226643 Gene

Additional gene information for ENSG00000226643 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000226643 Gene

Genomics for ENSG00000226643 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000226643 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J222464 Promoter/Enhancer 1.7 FANTOM5 ENCODE CraniofacialAtlas 0.7 +4.7 4719 1.7 CHD2 TBP MXD4 CEBPA MNT IKZF1 SMAD5 HES1 ZFP64 MBD2 KR153243-001 TRT-TGT2-1 TAF1A HHIPL2 MIA3 ENSG00000226643 DUSP10
GH01J222454 Promoter/Enhancer 1.3 Ensembl ENCODE 0.4 +15.2 15172 1.8 CEBPA IRF2 ZNF217 BRCA1 CTCF BHLHE40 CEBPB ARNT SIN3A REST CICP13 ENSG00000272750 HHIPL2 TAF1A TRT-TGT2-1 ENSG00000226643 piR-61532-029 DUSP10
GH01J222416 Enhancer 0.7 FANTOM5 Ensembl ENCODE 0.2 +50.9 50914 6.2 ZNF610 CREB1 POLR2A HHIPL2 piR-61532-029 TRT-TGT2-1 ENSG00000226643 DUSP10
GH01J222443 Enhancer 0.3 Ensembl 0.3 +26.4 26414 0.4 MEIS2 TRT-TGT2-1 ENSG00000226643 piR-61532-029 HHIPL2 DUSP10
GH01J222384 Enhancer 0.3 Ensembl 0.2 +85.4 85414 0.4 ATF2 CEBPB ENSG00000236230 piR-39341-031 HSALNG0010839 ENSG00000226643 HHIPL2 DUSP10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000226643 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000226643 Gene

Latest Assembly
chr1:222,374,215-222,470,415
(GRCh38/hg38)
Size:
96,201 bases
Orientation:
Minus strand

Previous Assembly
chr1:222,626,082-222,628,047
(GRCh37/hg19 by Ensembl)
Size:
1,966 bases
Orientation:
Minus strand

Genomic View for ENSG00000226643 Gene

Genes around ENSG00000226643 on UCSC Golden Path with GeneCards custom track
ENSG00000226643 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000226643 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000226643 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000226643 Gene

Proteins for ENSG00000226643 Gene

Post-translational modifications for ENSG00000226643 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000226643 Gene

Domains & Families for ENSG00000226643 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000226643 Gene

Function for ENSG00000226643 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000226643 Gene

Localization for ENSG00000226643 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000226643 Gene

Pathways & Interactions for ENSG00000226643 Gene

PathCards logo

SuperPathways for ENSG00000226643 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000226643 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000226643 Gene

Drugs & Compounds for ENSG00000226643 Gene

No Compound Related Data Available

Transcripts for ENSG00000226643 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000226643 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000763DBC_9606 lncRNA 321 3

Ensembl: ENST00000455363 (view in UCSC) ,

LncBook: HSALNT0022525,

LNCipedia: lnc-HHIPL2-1:2,

URS0000D5B4AA_9606 lncRNA 2780 2

LncBook: HSALNT0022518,

LNCipedia: lnc-HHIPL2-1:6,

URS0000D5E261_9606 lncRNA 348 2

LncBook: HSALNT0022524,

LNCipedia: lnc-HHIPL2-1:4,

URS00003967C7_9606 lncRNA 319 2

LNCipedia: lnc-HHIPL2-1:1,

NONCODE: NONHSAT009658.2,

URS00009B2554_9606 lncRNA 314 2

LncBook: HSALNT0022526,

NONCODE: NONHSAT153006.1,

ENSG00000226643 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000226643 Gene

No ASD Table

Relevant External Links for ENSG00000226643 Gene

GeneLoc Exon Structure for
ENSG00000226643

No data available for mRNA/cDNA for ENSG00000226643 Gene

Expression for ENSG00000226643 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000226643 Gene

genes like me logo Genes that share expression patterns with ENSG00000226643: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000226643 Gene

Orthologs for ENSG00000226643 Gene

Evolution for ENSG00000226643 Gene

ENSEMBL:
Gene Tree for ENSG00000226643 (if available)
TreeFam:
Gene Tree for ENSG00000226643 (if available)

No data available for Orthologs for ENSG00000226643 Gene

Paralogs for ENSG00000226643 Gene

No data available for Paralogs for ENSG00000226643 Gene

Variants for ENSG00000226643 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000226643 Gene

Disorders for ENSG00000226643 Gene

No disorders were found for ENSG00000226643 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000226643 Gene

Publications for ENSG00000226643 Gene

No publications were found for ENSG00000226643 Gene.

No data available for Mastermind for ENSG00000226643 Gene

Products for ENSG00000226643 Gene

Sources for ENSG00000226643 Gene