ENSG00000226472 Gene (Pseudogene)

 

GC12M030978
GIFtS:
4
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Aliases for ENSG00000226472 Gene

Aliases for ENSG00000226472 Gene

  • Tetraspanin Family Pseudogene 5
  • AC008013.1 5

External Ids for ENSG00000226472 Gene

Previous GeneCards Identifiers for ENSG00000226472 Gene

  • GC03P018003
  • GC12M031149

Summaries for ENSG00000226472 Gene

GeneCards Summary for ENSG00000226472 Gene

ENSG00000226472 is a Pseudogene.

Additional gene information for ENSG00000226472 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000226472 Gene

Genomics for ENSG00000226472 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000226472 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J031003 Enhancer 0.7 Ensembl ENCODE 250.7 +0.8 809 4.4 GABPA BHLHE40 IKZF1 ZNF366 ZNF692 ZNF660 PATZ1 RELB ZFHX2 ZNF600 ENSG00000226472 HSALNG0090160 HSALNG0090161 lnc-CAPRIN2-2 DDX11 TSPAN11
GH12J030989 Enhancer 0.7 Ensembl ENCODE 0.4 +16.3 16315 2.2 CTCF ZIC2 ZNF513 SMC3 FOXA2 RAD21 ZNF189 ZNF692 ZNF143 MNT DDX11 piR-60318 piR-57551 ENSG00000226472 lnc-CAPRIN2-2 TSPAN11
GH12J030995 Enhancer 0.6 Ensembl ENCODE 0.4 +9.2 9228 1.6 FOSL1 JUND FOS ZSCAN5C HSALNG0090159 TSPAN11 piR-60318 ENSG00000226472 lnc-CAPRIN2-2 DDX11
GH12J030985 Enhancer 0.7 Ensembl ENCODE 0.3 +20.1 20082 0.3 CTCF SMC3 RAD21 GLIS1 PPARG ZNF692 ZNF143 TRIM22 XRCC5 YY1 piR-57551 ENSG00000226472 lnc-CAPRIN2-2 TSPAN11 DDX11
GH12J030976 Enhancer 0.7 Ensembl ENCODE 0.3 +28.1 28109 3.8 ATF4 ZFP36 ZMYM3 EGR2 CREB1 ATF7 CEBPB ZFHX2 TSPAN11 piR-57551 ENSG00000226472 lnc-CAPRIN2-2 DDX11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000226472 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000226472 Gene

Latest Assembly
chr12:30,978,308-31,006,010
(GRCh38/hg38)
Size:
27,703 bases
Orientation:
Minus strand

Previous Assembly
chr12:31,149,973-31,158,938
(GRCh37/hg19 by Ensembl)
Size:
8,966 bases
Orientation:
Minus strand

Genomic View for ENSG00000226472 Gene

Genes around ENSG00000226472 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000226472 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000226472 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000226472 Gene

Proteins for ENSG00000226472 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for ENSG00000226472 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000226472 Gene

Domains & Families for ENSG00000226472 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000226472 Gene

Function for ENSG00000226472 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for ENSG00000226472 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000226472 Gene

Localization for ENSG00000226472 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000226472 Gene

Pathways & Interactions for ENSG00000226472 Gene

PathCards logo

SuperPathways for ENSG00000226472 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000226472 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000226472 Gene

Drugs & Compounds for ENSG00000226472 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for ENSG00000226472 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for ENSG00000226472 Gene

7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000226472 Gene

No ASD Table

Relevant External Links for ENSG00000226472 Gene

GeneLoc Exon Structure for
ENSG00000226472

Expression for ENSG00000226472 Gene

Products:

  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000226472 Gene

mRNA expression in normal human tissues for ENSG00000226472 Gene
mRNA expression by GTEx for ENSG00000226472 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000226472 Gene

This gene is overexpressed in Spleen (x17.4).
genes like me logo Genes that share expression patterns with ENSG00000226472: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000226472 Gene

Orthologs for ENSG00000226472 Gene

Evolution for ENSG00000226472 Gene

ENSEMBL:
Gene Tree for ENSG00000226472 (if available)
TreeFam:
Gene Tree for ENSG00000226472 (if available)

No data available for Orthologs for ENSG00000226472 Gene

Paralogs for ENSG00000226472 Gene

No data available for Paralogs for ENSG00000226472 Gene

Variants for ENSG00000226472 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000226472 Gene

Disorders for ENSG00000226472 Gene

No disorders were found for ENSG00000226472 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000226472 Gene

Publications for ENSG00000226472 Gene

No publications were found for ENSG00000226472 Gene.

No data available for Mastermind for ENSG00000226472 Gene

Products for ENSG00000226472 Gene

Sources for ENSG00000226472 Gene