Aliases for ENSG00000226375 Gene

Subcategory (RNA class) for ENSG00000226375 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000226375 Gene

  • Novel Transcript 5
  • NONHSAG003481.2 91
  • HSALNG0008503 164
  • Lnc-TNFSF4-1 165
  • AL022310.1 5

External Ids for ENSG00000226375 Gene

Previous GeneCards Identifiers for ENSG00000226375 Gene

  • GC01M173143

Summaries for ENSG00000226375 Gene

GeneCards Summary for ENSG00000226375 Gene

ENSG00000226375 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000226375 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000226375 Gene

Genomics for ENSG00000226375 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000226375 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J173175 Enhancer 0.4 Ensembl ENCODE 606 -0.5 -497 1.2 GATA3 ENSG00000226375 TNFSF18 piR-38351-029 TNFSF4
GH01J173200 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 4.8 -29.4 -29372 7.9 GATAD2A CTCF TFE3 RCOR2 RELA RXRB REST RAD21 IRF2 IKZF2 lnc-TNFSF18-4 TNFSF4 ENSG00000224228 TNFSF18 ENSG00000226375 piR-38351-029
GH01J173192 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 5.5 -19.2 -19225 3.6 BACH1 LARP7 IKZF2 EED DPF2 RELB JUND RUNX3 GATAD2B CBFB ENSG00000224228 ENSG00000226375 TNFSF4 piR-38351-029 lnc-TNFSF18-4 TNFSF18
GH01J173189 Enhancer 1.3 Ensembl ENCODE dbSUPER 5 -15.4 -15369 3.7 HNRNPL GATAD2A PRDM10 REST TFE3 ZNF692 RXRB IRF2 SP1 ZFX ENSG00000224228 ENSG00000226375 piR-38351-029 lnc-TNFSF18-4 TNFSF18 TNFSF4
GH01J172320 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas 4.7 +851.7 851702 6.7 RNF2 PRDM10 ZNF629 RFX5 ZNF692 FOXA1 RFX1 ZIC2 PATZ1 ZNF600 FASLG ENSG00000226375 piR-58308-018 RF00026-085 RNU6-157P C1orf105 DNM3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000226375 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000226375 Gene

Genomic Locations for ENSG00000226375 Gene
chr1:173,174,300-173,175,504
(GRCh38/hg38)
Size:
1,205 bases
Orientation:
Minus strand
chr1:173,143,439-173,144,642
(GRCh37/hg19)
Size:
1,204 bases
Orientation:
Minus strand

Genomic View for ENSG00000226375 Gene

Genes around ENSG00000226375 on UCSC Golden Path with GeneCards custom track
ENSG00000226375 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000226375 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000226375 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000226375 Gene

Proteins for ENSG00000226375 Gene

Post-translational modifications for ENSG00000226375 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000226375 Gene

Domains & Families for ENSG00000226375 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000226375 Gene

Function for ENSG00000226375 Gene

Phenotypes From GWAS Catalog for ENSG00000226375 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000226375 Gene

Localization for ENSG00000226375 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000226375 Gene

Pathways & Interactions for ENSG00000226375 Gene

PathCards logo

SuperPathways for ENSG00000226375 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000226375 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000226375 Gene

Drugs & Compounds for ENSG00000226375 Gene

No Compound Related Data Available

Transcripts for ENSG00000226375 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000226375 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000443CE9_9606 lncRNA 690 4

Ensembl: ENST00000436974 (view in UCSC) ,

LncBook: HSALNT0017601,

LNCipedia: lnc-TNFSF4-1:1,

NONCODE: NONHSAT007626.2,

URS00009AED43_9606 lncRNA 690 1

NONCODE: NONHSAT152548.1,

ENSG00000226375 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000226375 Gene

No ASD Table

Relevant External Links for ENSG00000226375 Gene

GeneLoc Exon Structure for
ENSG00000226375

No data available for mRNA/cDNA for ENSG00000226375 Gene

Expression for ENSG00000226375 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000226375 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000226375 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000226375: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000226375 Gene

Orthologs for ENSG00000226375 Gene

Evolution for ENSG00000226375 Gene

ENSEMBL:
Gene Tree for ENSG00000226375 (if available)
TreeFam:
Gene Tree for ENSG00000226375 (if available)

No data available for Orthologs for ENSG00000226375 Gene

Paralogs for ENSG00000226375 Gene

No data available for Paralogs for ENSG00000226375 Gene

Variants for ENSG00000226375 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000226375 Gene

Disorders for ENSG00000226375 Gene

Additional Disease Information for ENSG00000226375

No disorders were found for ENSG00000226375 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000226375 Gene

Publications for ENSG00000226375 Gene

No publications were found for ENSG00000226375 Gene.

No data available for Mastermind for ENSG00000226375 Gene

Products for ENSG00000226375 Gene

Sources for ENSG00000226375 Gene