Aliases for ENSG00000226172 Gene

Aliases for ENSG00000226172 Gene

  • Novel Transcript 5
  • HSALNG0006457 167
  • NONHSAG002570 92
  • Lnc-TBX15-1 168
  • AL139420.1 5

External Ids for ENSG00000226172 Gene

Previous GeneCards Identifiers for ENSG00000226172 Gene

  • GC01M119542

Summaries for ENSG00000226172 Gene

GeneCards Summary for ENSG00000226172 Gene

ENSG00000226172 is an Uncategorized gene.

Additional gene information for ENSG00000226172 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000226172 Gene

Genomics for ENSG00000226172 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000226172 Gene

Promoters and enhancers for ENSG00000226172 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J119000 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 500.7 -0.1 -141 2.5 CTCF USF1 MCM3 SMARCC1 GABPA CEBPG FOS CEBPB FOSL1 ZNF395 ENSG00000226172 ENSG00000239216 LOC105378933 TBX15 WARS2 lnc-WARS2-3
GH01J118981 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.3 +15.1 15145 9 EZH2 HDAC2 POLR2A POLR2G TCF12 E2F6 CTCF ZNF395 CBX8 SUZ12 TBX15 WARS2 ENSG00000226172 WARS2-AS1 HSALNG0006455
GH01J118958 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +40.9 40888 3.8 EP300 FOXK2 POLR2G NCOR1 KDM6A TCF7 ZBTB25 TGIF2 CTBP1 SMARCC2 WARS2 ENSG00000226172 WARS2-AS1 TBX15 HSALNG0006455
GH01J118977 Enhancer 0.5 dbSUPER 11.9 +22.2 22197 3 EZH2 CBX8 RNF2 L3MBTL2 SUZ12 CHD2 HMBOX1 WARS2-AS1 ENSG00000226172 WARS2 TBX15 HSALNG0006455
GH01J118946 Enhancer 0.9 Ensembl ENCODE dbSUPER 6.2 +53.0 52960 2.9 CEBPG FOSL1 EZH2 NR2F1 ESR1 HLF ATF3 CEBPB NR2C1 RXRA WARS2 ENSG00000226172 TBX15 HSALNG0006455
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000226172 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000226172 Gene

Genomic Locations for ENSG00000226172 Gene
chr1:119,000,344-119,001,392
(GRCh38/hg38)
Size:
1,049 bases
Orientation:
Minus strand
chr1:119,542,967-119,544,015
(GRCh37/hg19)
Size:
1,049 bases
Orientation:
Minus strand

Genomic View for ENSG00000226172 Gene

Genes around ENSG00000226172 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000226172 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000226172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000226172 Gene

Proteins for ENSG00000226172 Gene

Post-translational modifications for ENSG00000226172 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000226172 Gene

Domains & Families for ENSG00000226172 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000226172 Gene

Function for ENSG00000226172 Gene

Phenotypes From GWAS Catalog for ENSG00000226172 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000226172 Gene

Localization for ENSG00000226172 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000226172 Gene

Pathways & Interactions for ENSG00000226172 Gene

PathCards logo

SuperPathways for ENSG00000226172 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000226172 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000226172 Gene

Drugs & Compounds for ENSG00000226172 Gene

No Compound Related Data Available

Transcripts for ENSG00000226172 Gene

mRNA/cDNA for ENSG00000226172 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 RNACentral transcripts :
2 NONCODE transcripts :
2 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000226172 Gene

No ASD Table

Relevant External Links for ENSG00000226172 Gene

GeneLoc Exon Structure for
ENSG00000226172

Expression for ENSG00000226172 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000226172 Gene

mRNA expression in normal human tissues for ENSG00000226172 Gene
genes like me logo Genes that share expression patterns with ENSG00000226172: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000226172 Gene

Orthologs for ENSG00000226172 Gene

Evolution for ENSG00000226172 Gene

ENSEMBL:
Gene Tree for ENSG00000226172 (if available)
TreeFam:
Gene Tree for ENSG00000226172 (if available)

No data available for Orthologs for ENSG00000226172 Gene

Paralogs for ENSG00000226172 Gene

No data available for Paralogs for ENSG00000226172 Gene

Variants for ENSG00000226172 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000226172 Gene

Disorders for ENSG00000226172 Gene

No disorders were found for ENSG00000226172 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000226172 Gene

Publications for ENSG00000226172 Gene

No publications were found for ENSG00000226172 Gene.

No data available for Mastermind for ENSG00000226172 Gene

Products for ENSG00000226172 Gene

Sources for ENSG00000226172 Gene