Aliases for ENSG00000226143 Gene

Subcategory (RNA class) for ENSG00000226143 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000226143 Gene

  • Novel Transcript 5
  • NONHSAG031818 94
  • HSALNG0130248 169
  • Lnc-GTSF1L-1 170
  • Z98752.1 5

External Ids for ENSG00000226143 Gene

Previous GeneCards Identifiers for ENSG00000226143 Gene

  • GC20M042178

Summaries for ENSG00000226143 Gene

GeneCards Summary for ENSG00000226143 Gene

ENSG00000226143 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000226143 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000226143 Gene

Genomics for ENSG00000226143 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000226143 Gene

Promoters and enhancers for ENSG00000226143 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J043549 Enhancer 0.6 Ensembl 750.6 +1.0 1048 1 RAD21 SP1 ZIC2 RXRA MNT JUND ATF3 YY1 ZBTB33 NR2F2 ENSG00000226143 ENSG00000277611 L3MBTL1
GH20J043513 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 11.4 +36.3 36348 2.8 SP1 ZBTB40 MLX POLR2A MYC NFYC L3MBTL2 MAX ZNF121 MNT HSALNG0130237 L3MBTL1 SGK2 RNU6-1251P ENSG00000226143 IFT52 RF00017-3594 ENSG00000288000
GH20J043578 Enhancer 0.7 Ensembl 11.5 -28.4 -28405 2.3 MYC TEAD4 CEBPG CBFA2T2 SMARCA4 PKNOX1 CEBPA RXRA LEF1 EP300 MYBL2 IFT52 SGK2 ENSG00000226143 lnc-SGK2-1 ENSG00000282876
GH20J043555 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE 0.4 -7.7 -7666 6.2 SIN3A MLX FOXA1 RBPJ SMARCE1 NR2F1 NR2F6 CREB1 MIXL1 MYC SGK2 SRSF6 IFT52 RNU6-1251P ENSG00000226143 ENSG00000277611
GH20J043541 Enhancer 0.7 Ensembl ENCODE 0.4 +9.2 9210 1.5 SP7 ZSCAN5C FOS FOXA2 JUND CEBPG GLIS1 KDM1A CBFA2T3 ENSG00000277611 ENSG00000226143 L3MBTL1 ENSG00000288000
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000226143 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000226143 Gene

Genomic Locations for ENSG00000226143 Gene
chr20:43,549,389-43,550,949
(GRCh38/hg38)
Size:
1,561 bases
Orientation:
Minus strand
chr20:42,178,029-42,179,589
(GRCh37/hg19)
Size:
1,561 bases
Orientation:
Minus strand

Genomic View for ENSG00000226143 Gene

Genes around ENSG00000226143 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000226143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000226143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000226143 Gene

Proteins for ENSG00000226143 Gene

Post-translational modifications for ENSG00000226143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000226143 Gene

Domains & Families for ENSG00000226143 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000226143 Gene

Function for ENSG00000226143 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000226143 Gene

Localization for ENSG00000226143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000226143 Gene

Pathways & Interactions for ENSG00000226143 Gene

PathCards logo

SuperPathways for ENSG00000226143 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000226143 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000226143 Gene

Drugs & Compounds for ENSG00000226143 Gene

No Compound Related Data Available

Transcripts for ENSG00000226143 Gene

mRNA/cDNA for ENSG00000226143 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) NONCODE transcripts :
(1) LNCipedia transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000226143 Gene

No ASD Table

Relevant External Links for ENSG00000226143 Gene

GeneLoc Exon Structure for
ENSG00000226143

Expression for ENSG00000226143 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000226143 Gene

genes like me logo Genes that share expression patterns with ENSG00000226143: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000226143 Gene

Orthologs for ENSG00000226143 Gene

Evolution for ENSG00000226143 Gene

ENSEMBL:
Gene Tree for ENSG00000226143 (if available)
TreeFam:
Gene Tree for ENSG00000226143 (if available)

No data available for Orthologs for ENSG00000226143 Gene

Paralogs for ENSG00000226143 Gene

No data available for Paralogs for ENSG00000226143 Gene

Variants for ENSG00000226143 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000226143 Gene

Disorders for ENSG00000226143 Gene

No disorders were found for ENSG00000226143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000226143 Gene

Publications for ENSG00000226143 Gene

No publications were found for ENSG00000226143 Gene.

No data available for External Links for ENSG00000226143 Gene

Products for ENSG00000226143 Gene

Sources for ENSG00000226143 Gene