Aliases for ENSG00000225982 Gene

Subcategory (RNA class) for ENSG00000225982 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225982 Gene

  • Novel Transcript 5
  • NONHSAG003656.2 91
  • HSALNG0008888 164
  • Lnc-CACNA1E-2 165
  • AL355482.2 5

External Ids for ENSG00000225982 Gene

Previous GeneCards Identifiers for ENSG00000225982 Gene

  • GC01P182055

Summaries for ENSG00000225982 Gene

GeneCards Summary for ENSG00000225982 Gene

ENSG00000225982 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225982 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225982 Gene

Genomics for ENSG00000225982 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225982 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J182084 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 605.6 +0.1 149 6.6 CTCF JUND FOXA1 ZIC2 REST RAD21 TRIM22 HDAC1 ZNF341 SCRT2 ENSG00000225982 GLUL DHX9 HMGN1P4 TEDDM1 RNASEL RGSL1 NPL ZNF648 LOC105371642
GH01J182100 Enhancer 0.9 ENCODE dbSUPER 5.4 +15.1 15076 2.3 TEAD4 KDM1A FOXA1 ZIC2 SP1 POLR2A SCRT2 SOX13 ESR1 CTBP1 TEDDM1 RGSL1 RNU6-152P RPL18P2 GLUL ENSG00000225982 LOC105371642 ZNF648 LINC01344
GH01J182091 Enhancer 0.6 Ensembl ENCODE dbSUPER 5.5 +5.8 5808 1.6 ZFHX2 GLUL RNU6-152P RPL18P2 ENSG00000225982 ZNF648 LOC105371642
GH01J182096 Enhancer 0.4 ENCODE 0.4 +9.6 9620 0 FOXA1 ZNF24 GATA3 NCOA3 GLUL RNU6-152P RPL18P2 ENSG00000225982 LOC105371642 ZNF648
GH01J182106 Enhancer 0.4 Ensembl 0.4 +21.0 20950 0.2 FOS RCOR1 ZNF274 DHX9 TEDDM1 LOC105371642 ENSG00000225982 ZNF648 LINC01344 GLUL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225982 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225982 Gene

Genomic Locations for ENSG00000225982 Gene
chr1:182,086,551-182,090,113
(GRCh38/hg38)
Size:
3,563 bases
Orientation:
Plus strand
chr1:182,055,686-182,059,247
(GRCh37/hg19)
Size:
3,562 bases
Orientation:
Plus strand

Genomic View for ENSG00000225982 Gene

Genes around ENSG00000225982 on UCSC Golden Path with GeneCards custom track
ENSG00000225982 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225982 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225982 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225982 Gene

Proteins for ENSG00000225982 Gene

Post-translational modifications for ENSG00000225982 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225982 Gene

Domains & Families for ENSG00000225982 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225982 Gene

Function for ENSG00000225982 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225982 Gene

Localization for ENSG00000225982 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225982 Gene

Pathways & Interactions for ENSG00000225982 Gene

PathCards logo

SuperPathways for ENSG00000225982 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225982 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225982 Gene

Drugs & Compounds for ENSG00000225982 Gene

No Compound Related Data Available

Transcripts for ENSG00000225982 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225982 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005EFC2A_9606 lncRNA 1145 4

Ensembl: ENST00000428646 (view in UCSC) ,

LncBook: HSALNT0018400,

LNCipedia: lnc-CACNA1E-2:1,

NONCODE: NONHSAT008304.2,

URS00009B6F1D_9606 lncRNA 1145 2

LncBook: HSALNT0018401,

NONCODE: NONHSAT150138.1,

ENSG00000225982 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225982 Gene

No ASD Table

Relevant External Links for ENSG00000225982 Gene

GeneLoc Exon Structure for
ENSG00000225982

No data available for mRNA/cDNA for ENSG00000225982 Gene

Expression for ENSG00000225982 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225982 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225982 Gene

This gene is overexpressed in Testis (x5.2) and Cervix - Endocervix (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000225982: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225982 Gene

Orthologs for ENSG00000225982 Gene

Evolution for ENSG00000225982 Gene

ENSEMBL:
Gene Tree for ENSG00000225982 (if available)
TreeFam:
Gene Tree for ENSG00000225982 (if available)

No data available for Orthologs for ENSG00000225982 Gene

Paralogs for ENSG00000225982 Gene

No data available for Paralogs for ENSG00000225982 Gene

Variants for ENSG00000225982 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225982 Gene

Disorders for ENSG00000225982 Gene

Additional Disease Information for ENSG00000225982

No disorders were found for ENSG00000225982 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000225982 Gene

Publications for ENSG00000225982 Gene

No publications were found for ENSG00000225982 Gene.

No data available for Mastermind for ENSG00000225982 Gene

Products for ENSG00000225982 Gene

Sources for ENSG00000225982 Gene