Aliases for ENSG00000225818 Gene

Data sources for ENSG00000225818 Gene:

Subcategory (RNA class) for ENSG00000225818 Gene

lncRNA

Aliases for ENSG00000225818 Gene

External Ids for ENSG00000225818 Gene

Previous GeneCards Identifiers for ENSG00000225818 Gene

  • GC17P069592

Summaries for ENSG00000225818 Gene

GeneCards Summary for ENSG00000225818 Gene

ENSG00000225818 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225818 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225818 Gene

Genomics for ENSG00000225818 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225818 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J071585 Enhancer 0.5 Ensembl 0.4 -10.8 -10836 0.6 MAFF ZNF316 MAFK MAFG HLF ENSG00000225818 lnc-SLC39A11-8 HSALNG0118503 ENSG00000286387 SOX9
GH17J071594 Enhancer 0.2 FANTOM5 0.7 -2.3 -2263 0 ENSG00000225818 lnc-SLC39A11-8 HSALNG0118503 ENSG00000286387 SOX9
GH17J071511 Enhancer 0.7 ENCODE 0.2 -84.4 -84431 1.1 FEZF1 ZNF610 ZNF513 ZNF341 ZNF843 ZNF585B PRDM6 ZNF2 ZBTB48 ZNF189 HSALNG0118503 ENSG00000225818 ENSG00000286387 SOX9
GH17J071516 Enhancer 0.8 Ensembl 0.2 -80.0 -80036 0.2 FEZF1 ZNF843 PRDM6 ZNF2 INSM2 ZNF189 ZNF664 GLIS1 SP7 PRDM4 HSALNG0118503 ENSG00000225818 ENSG00000286387 SOX9
GH17J071548 Enhancer 0.5 Ensembl 0.3 -47.3 -47336 0.8 MAFF NFE2 NFE2L2 MAFK EP300 ENSG00000225818 HSALNG0118503 ENSG00000286387 SOX9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225818 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225818 Gene

Latest Assembly
chr17:71,596,337-71,597,280
(GRCh38/hg38)
Size:
944 bases
Orientation:
Plus strand

Previous Assembly
chr17:69,592,479-69,593,420
(GRCh37/hg19 by Ensembl)
Size:
942 bases
Orientation:
Plus strand

Genomic View for ENSG00000225818 Gene

Genes around ENSG00000225818 on UCSC Golden Path with GeneCards custom track
ENSG00000225818 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225818 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225818 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225818 Gene

Proteins for ENSG00000225818 Gene

Post-translational modifications for ENSG00000225818 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225818 Gene

Domains & Families for ENSG00000225818 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225818 Gene

Function for ENSG00000225818 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225818 Gene

Localization for ENSG00000225818 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225818 Gene

Pathways & Interactions for ENSG00000225818 Gene

PathCards logo

SuperPathways for ENSG00000225818 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225818 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225818 Gene

Drugs & Compounds for ENSG00000225818 Gene

No Compound Related Data Available

Transcripts for ENSG00000225818 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225818 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001A7D90_9606 lncRNA 563 4

Ensembl: ENST00000442627 (view in UCSC) ,

LncBook: HSALNT0244695,

LNCipedia: lnc-SOX9-6:1,

NONCODE: NONHSAT055633.2,

URS0000358BD3_9606 lncRNA 434 4

Ensembl: ENST00000450826 (view in UCSC) ,

LncBook: HSALNT0244697,

LNCipedia: lnc-SOX9-6:2,

NONCODE: NONHSAT055634.2,

URS00009BB508_9606 lncRNA 570 1

NONCODE: NONHSAT175575.1,

ENSG00000225818 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225818 Gene

No ASD Table

Relevant External Links for ENSG00000225818 Gene

GeneLoc Exon Structure for
ENSG00000225818

No data available for mRNA/cDNA for ENSG00000225818 Gene

Expression for ENSG00000225818 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225818 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225818 Gene

This gene is overexpressed in Testis (x50.2).
genes like me logo Genes that share expression patterns with ENSG00000225818: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225818 Gene

Orthologs for ENSG00000225818 Gene

Evolution for ENSG00000225818 Gene

ENSEMBL:
Gene Tree for ENSG00000225818 (if available)
TreeFam:
Gene Tree for ENSG00000225818 (if available)

No data available for Orthologs for ENSG00000225818 Gene

Paralogs for ENSG00000225818 Gene

No data available for Paralogs for ENSG00000225818 Gene

Variants for ENSG00000225818 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225818 Gene

Disorders for ENSG00000225818 Gene

No disorders were found for ENSG00000225818 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225818 Gene

Publications for ENSG00000225818 Gene

No publications were found for ENSG00000225818 Gene.

No data available for Mastermind for ENSG00000225818 Gene

Products for ENSG00000225818 Gene

Sources for ENSG00000225818 Gene