Aliases for ENSG00000225815 Gene

Subcategory (RNA class) for ENSG00000225815 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225815 Gene

  • Novel Transcript 5
  • NONHSAG028016.2 91
  • HSALNG0015576 164
  • Lnc-MEIS1-2 165
  • AC092669.1 5

External Ids for ENSG00000225815 Gene

Previous GeneCards Identifiers for ENSG00000225815 Gene

  • GC02P066554

Summaries for ENSG00000225815 Gene

GeneCards Summary for ENSG00000225815 Gene

ENSG00000225815 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000225815 include Astrocytoma.

Additional gene information for ENSG00000225815 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225815 Gene

Genomics for ENSG00000225815 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225815 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J066325 Enhancer 0.7 Ensembl 600.7 -1.9 -1948 0.4 ZNF629 ZNF600 SCRT2 ZBTB44 TSHZ1 ZSCAN5C OSR2 ZBTB17 SCRT1 WT1 ENSG00000225815 lnc-SPRED2-17 MEIS1 SPRED2
GH02J066323 Enhancer 0.6 Ensembl CraniofacialAtlas 0.7 -3.7 -3714 0.7 SCRT2 POLR2A SMARCA4 GATA2 MEIS1-AS3 ENSG00000225815 lnc-SPRED2-17 MEIS1 SPRED2
GH02J066322 Enhancer 0.6 Ensembl CraniofacialAtlas 0.7 -4.6 -4614 0.9 PRDM10 ZNF146 SMARCA4 ENSG00000225815 lnc-SPRED2-17 MEIS1 SPRED2
GH02J066324 Enhancer 0.4 CraniofacialAtlas 0.7 -2.4 -2380 0.2 SCRT2 SCRT1 TRIM28 ENSG00000225815 lnc-SPRED2-17 MEIS1 SPRED2
GH02J066305 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 0.4 -21.7 -21659 1.4 MNT GATA2 lnc-SPRED2-17 ENSG00000225815 MEIS1 SPRED2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225815 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225815 Gene

Genomic Locations for ENSG00000225815 Gene
chr2:66,327,349-66,328,984
(GRCh38/hg38)
Size:
1,636 bases
Orientation:
Plus strand
chr2:66,554,481-66,556,116
(GRCh37/hg19)
Size:
1,636 bases
Orientation:
Plus strand

Genomic View for ENSG00000225815 Gene

Genes around ENSG00000225815 on UCSC Golden Path with GeneCards custom track
ENSG00000225815 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225815 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225815 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225815 Gene

Proteins for ENSG00000225815 Gene

Post-translational modifications for ENSG00000225815 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225815 Gene

Domains & Families for ENSG00000225815 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225815 Gene

Function for ENSG00000225815 Gene

Phenotypes From GWAS Catalog for ENSG00000225815 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225815 Gene

Localization for ENSG00000225815 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225815 Gene

Pathways & Interactions for ENSG00000225815 Gene

PathCards logo

SuperPathways for ENSG00000225815 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225815 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225815 Gene

Drugs & Compounds for ENSG00000225815 Gene

No Compound Related Data Available

Transcripts for ENSG00000225815 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225815 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000440ED0_9606 lncRNA 1024 4

Ensembl: ENST00000412313 (view in UCSC) ,

LncBook: HSALNT0032991,

LNCipedia: lnc-MEIS1-2:2,

NONCODE: NONHSAT071217.2,

URS000021BCFA_9606 lncRNA 905 4

Ensembl: ENST00000449673 (view in UCSC) ,

LncBook: HSALNT0032992,

LNCipedia: lnc-MEIS1-2:3,

NONCODE: NONHSAT071218.2,

URS0000290832_9606 lncRNA 774 1

LNCipedia: lnc-MEIS1-2:1,

ENSG00000225815 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225815 Gene

No ASD Table

Relevant External Links for ENSG00000225815 Gene

GeneLoc Exon Structure for
ENSG00000225815

No data available for mRNA/cDNA for ENSG00000225815 Gene

Expression for ENSG00000225815 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225815 Gene

mRNA expression in normal human tissues for ENSG00000225815 Gene
genes like me logo Genes that share expression patterns with ENSG00000225815: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225815 Gene

Orthologs for ENSG00000225815 Gene

Evolution for ENSG00000225815 Gene

ENSEMBL:
Gene Tree for ENSG00000225815 (if available)
TreeFam:
Gene Tree for ENSG00000225815 (if available)

No data available for Orthologs for ENSG00000225815 Gene

Paralogs for ENSG00000225815 Gene

No data available for Paralogs for ENSG00000225815 Gene

Variants for ENSG00000225815 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225815 Gene

Disorders for ENSG00000225815 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000225815 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000225815: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225815 Gene

Publications for ENSG00000225815 Gene

No publications were found for ENSG00000225815 Gene.

No data available for Mastermind for ENSG00000225815 Gene

Products for ENSG00000225815 Gene

Sources for ENSG00000225815 Gene