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Aliases for ENSG00000225643 Gene

Quality Score for this RNA gene is

13

Aliases for ENSG00000225643 Gene

  • AL606491.1 5

External Ids for ENSG00000225643 Gene

Previous GeneCards Identifiers for ENSG00000225643 Gene

  • GC01P025907

Summaries for ENSG00000225643 Gene

GeneCards Summary for ENSG00000225643 Gene

ENSG00000225643 is an RNA Gene.

Additional gene information for ENSG00000225643 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000225643 Gene

Genomics for ENSG00000225643 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000225643 Gene

Promoters and enhancers for ENSG00000225643 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J024908 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.9 -661.7 -661727 22.8 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B NEUROD1 SIN3A FEZF1 RUNX3 MIR6731 RCAN3 ENSG00000231953 RNU6-1208P RSRP1 ENSG00000225643 ENSG00000261349 SRRM1 SYF2
GH01J025614 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 7.2 +35.7 35749 4.6 PKNOX1 ARID4B SIN3A ZNF2 ZNF48 ETS1 ZNF766 GLIS2 ZNF213 ZNF143 MAN1C1 SRRM1 ENSG00000207302 ENSG00000231953 ENSG00000261025 RPL39P7 LOC101928324 ENSG00000261349 LIN28A HMGN2
GH01J025559 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 6.3 -19.7 -19657 4 HDGF HDAC1 PTBP1 SMAD1 ZNF473 KLF17 IRF4 ATF7 IKZF2 RUNX3 LDLRAP1 LOC101928324 ENSG00000233478 LIN28A ENSG00000225643 SDHDP6 TMEM50A
GH01J026034 Enhancer 1.4 Ensembl ENCODE dbSUPER 5.4 +455.5 455529 4.8 PKNOX1 SMAD1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 POLR2B ZNF213 LOC101928216 TRIM63 PAFAH2 ENSG00000252190 ENSG00000252691 GPATCH3 FAM110D ARID1A ZNF593 ENSG00000236782
GH01J025640 Enhancer 1.1 FANTOM5 Ensembl ENCODE 6.7 +60.9 60910 3.4 RXRA JUN CEBPB CEBPG EBF1 RAD21 POLR2A RUNX3 IKZF2 ENSG00000225643 MTFR1L RSRP1 LDLRAP1 MAN1C1 PDIK1L SYF2 MACO1 ENSG00000233478
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225643 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000225643 Gene

Genomic Locations for ENSG00000225643 Gene
chr1:25,581,478-25,590,356
(GRCh38/hg38)
Size:
8,879 bases
Orientation:
Plus strand
chr1:25,907,969-25,916,847
(GRCh37/hg19)
Size:
8,879 bases
Orientation:
Plus strand

Genomic View for ENSG00000225643 Gene

Genes around ENSG00000225643 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000225643 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225643 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225643 Gene

Proteins for ENSG00000225643 Gene

Post-translational modifications for ENSG00000225643 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225643 Gene

Domains & Families for ENSG00000225643 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000225643 Gene

Function for ENSG00000225643 Gene

Phenotypes From GWAS Catalog for ENSG00000225643 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225643 Gene

Localization for ENSG00000225643 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225643 Gene

Pathways & Interactions for ENSG00000225643 Gene

SuperPathways for ENSG00000225643 Gene

No Data Available

Interacting Proteins for ENSG00000225643 Gene

Gene Ontology (GO) - Biological Process for ENSG00000225643 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000225643 Gene

Drugs & Compounds for ENSG00000225643 Gene

No Compound Related Data Available

Transcripts for ENSG00000225643 Gene

mRNA/cDNA for ENSG00000225643 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225643 Gene

No ASD Table

Relevant External Links for ENSG00000225643 Gene

GeneLoc Exon Structure for
ENSG00000225643

Expression for ENSG00000225643 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000225643 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225643 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.3) and Brain - Cerebellum (x6.0).
genes like me logo Genes that share expression patterns with ENSG00000225643: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225643 Gene

Orthologs for ENSG00000225643 Gene

Evolution for ENSG00000225643 Gene

ENSEMBL:
Gene Tree for ENSG00000225643 (if available)
TreeFam:
Gene Tree for ENSG00000225643 (if available)

No data available for Orthologs for ENSG00000225643 Gene

Paralogs for ENSG00000225643 Gene

No data available for Paralogs for ENSG00000225643 Gene

Variants for ENSG00000225643 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225643 Gene

Disorders for ENSG00000225643 Gene

No disorders were found for ENSG00000225643 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225643 Gene

Publications for ENSG00000225643 Gene

No publications were found for ENSG00000225643 Gene.

Products for ENSG00000225643 Gene

Sources for ENSG00000225643 Gene

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