Aliases for ENSG00000225637 Gene

Subcategory (RNA class) for ENSG00000225637 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000225637 Gene

  • Novel Transcript 5
  • NONHSAG032980.2 91
  • Lnc-CRYAA-2 165
  • AP001046.1 5

External Ids for ENSG00000225637 Gene

Previous GeneCards Identifiers for ENSG00000225637 Gene

  • GC21P044783

Summaries for ENSG00000225637 Gene

GeneCards Summary for ENSG00000225637 Gene

ENSG00000225637 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000225637 include Astrocytoma.

Additional gene information for ENSG00000225637 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225637 Gene

Genomics for ENSG00000225637 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225637 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043360 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 606.8 +0.1 65 3.1 PKNOX1 SP1 POLR2A HDAC1 SOX6 CTCF CEBPB CTBP1 RUNX3 HES1 LINC01679 ENSG00000225637 SIK1 FRGCA CRYAA
GH21J043359 Enhancer 0.5 dbSUPER 605.4 -1.9 -1859 0.7 ZSCAN4 EGR1 ZNF662 ZFHX2 YY2 ENSG00000225637 RRP1B WDR4 PDE9A LINC01679 lnc-CRYAA-1 SIK1 CRYAA
GH21J043372 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 5.9 +11.4 11365 1.3 ZIC2 RUNX3 BRCA1 CEBPB CHD2 RCOR1 GTF2F1 MAX SMC3 TBP SIK1 ENSG00000225637 LINC01679 lnc-SIK1-2 CRYAA
GH21J043369 Enhancer 0.9 ENCODE CraniofacialAtlas dbSUPER 5.3 +8.3 8300 1.6 USF1 FOSL1 FOSL2 TOE1 FOS ATF7 SMARCA4 IKZF2 SIK1 ENSG00000225637 TRPM2 FRGCA LINC01679 lnc-SIK1-2 CRYAA
GH21J043364 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 +3.5 3544 1.6 HNRNPL TFE3 ZIC2 RXRB ESR1 ZNF423 NFIC ZFHX2 SAP130 POLR2A SIK1 LINC01679 ENSG00000225637 lnc-SIK1-2 CRYAA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225637 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225637 Gene

Genomic Locations for ENSG00000225637 Gene
chr21:43,361,999-43,369,274
(GRCh38/hg38)
Size:
7,276 bases
Orientation:
Plus strand
chr21:44,783,212-44,786,446
(GRCh37/hg19)
Size:
3,235 bases
Orientation:
Plus strand

Genomic View for ENSG00000225637 Gene

Genes around ENSG00000225637 on UCSC Golden Path with GeneCards custom track
ENSG00000225637 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225637 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225637 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225637 Gene

Proteins for ENSG00000225637 Gene

Post-translational modifications for ENSG00000225637 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225637 Gene

Domains & Families for ENSG00000225637 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225637 Gene

Function for ENSG00000225637 Gene

Phenotypes From GWAS Catalog for ENSG00000225637 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225637 Gene

Localization for ENSG00000225637 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225637 Gene

Pathways & Interactions for ENSG00000225637 Gene

PathCards logo

SuperPathways for ENSG00000225637 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225637 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225637 Gene

Drugs & Compounds for ENSG00000225637 Gene

No Compound Related Data Available

Transcripts for ENSG00000225637 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225637 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003F49F2_9606 lncRNA 2816 3

Ensembl: ENST00000435702 (view in UCSC) ,

LNCipedia: lnc-CRYAA-2:1,

NONCODE: NONHSAT082401.2,

URS0000D5728A_9606 lncRNA 6857 1

LNCipedia: lnc-CRYAA-2:3,

URS00009BCDBB_9606 lncRNA 2816 1

NONCODE: NONHSAT191032.1,

URS0000D5C1CE_9606 lncRNA 2041 1

LNCipedia: lnc-CRYAA-2:2,

ENSG00000225637 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225637 Gene

No ASD Table

Relevant External Links for ENSG00000225637 Gene

GeneLoc Exon Structure for
ENSG00000225637

No data available for mRNA/cDNA for ENSG00000225637 Gene

Expression for ENSG00000225637 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225637 Gene

Orthologs for ENSG00000225637 Gene

Evolution for ENSG00000225637 Gene

ENSEMBL:
Gene Tree for ENSG00000225637 (if available)
TreeFam:
Gene Tree for ENSG00000225637 (if available)

No data available for Orthologs for ENSG00000225637 Gene

Paralogs for ENSG00000225637 Gene

No data available for Paralogs for ENSG00000225637 Gene

Variants for ENSG00000225637 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225637 Gene

Disorders for ENSG00000225637 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000225637 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ENSG00000225637

genes like me logo Genes that share disorders with ENSG00000225637: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ENSG00000225637 Gene

Publications for ENSG00000225637 Gene

No publications were found for ENSG00000225637 Gene.

No data available for Mastermind for ENSG00000225637 Gene

Products for ENSG00000225637 Gene

Sources for ENSG00000225637 Gene