Aliases for ENSG00000225472 Gene

Data sources for ENSG00000225472 Gene:

RNA type for ENSG00000225472 Gene

lncRNA

Aliases for ENSG00000225472 Gene

External Ids for ENSG00000225472 Gene

Summaries for ENSG00000225472 Gene

GeneCards Summary for ENSG00000225472 Gene

ENSG00000225472 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225472 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225472 Gene

Genomics for ENSG00000225472 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225472 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J014342 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 +41.4 41449 11.4 ZNF654 POLR2A REST TRIM22 CTCF MAX SIN3A FOXA2 RAD21 SMC3 NFIB ENSG00000225472 ZDHHC21 HSALNG0070086 hsa-miR-5096-137
GH09J014271 Enhancer 1.6 UCNEbase ENCODE CraniofacialAtlas dbSUPER 11.6 -32.2 -32200 9.3 JUND ZNF10 NFIC REST FEZF1 ZNF341 ZEB1 KLF9 ZNF610 FOXA2 ENSG00000225472 NFIB RPL7AP47 MPDZ
GH09J014153 Enhancer 1 Ensembl ENCODE 10.7 -153.7 -153677 0.8 ZNF600 ZNF580 ZSCAN16 ZIC2 FEZF1 ZNF341 ZEB1 KLF7 FOXA2 ZNF610 ENSG00000225472 NFIB RPL7AP47 HSALNG0070085 MPDZ
GH09J014154 Enhancer 0.8 Ensembl ENCODE dbSUPER 10.7 -151.2 -151177 3.4 CBFB TCF12 IKZF2 MTA2 RUNX3 ENSG00000225472 NFIB RPL7AP47 HSALNG0070085 MPDZ
GH09J014331 Enhancer 0.6 ENCODE dbSUPER 12.5 +24.4 24449 0.2 CTBP1 CUX1 TCF7L2 ZNF217 DPF2 RFX1 ENSG00000225472 NFIB HSALNG0070086
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225472 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225472 Gene

Latest Assembly
chr9:14,307,078-14,359,244
(GRCh38/hg38)
Size:
52,167 bases
Orientation:
Plus strand

Previous Assembly
chr9:14,317,084-14,357,907
(GRCh37/hg19 by Ensembl)
Size:
40,824 bases
Orientation:
Plus strand

Genomic View for ENSG00000225472 Gene

Genes around ENSG00000225472 on UCSC Golden Path with GeneCards custom track
ENSG00000225472 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225472 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225472 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225472 Gene

Proteins for ENSG00000225472 Gene

Post-translational modifications for ENSG00000225472 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225472 Gene

Domains & Families for ENSG00000225472 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225472 Gene

Function for ENSG00000225472 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225472 Gene

Localization for ENSG00000225472 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225472 Gene

Pathways & Interactions for ENSG00000225472 Gene

PathCards logo

SuperPathways for ENSG00000225472 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225472 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225472 Gene

Drugs & Compounds for ENSG00000225472 Gene

No Compound Related Data Available

Transcripts for ENSG00000225472 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225472 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00004AB1C1_9606 lncRNA 793 3

Ensembl: ENST00000440947 (view in UCSC) ,

LNCipedia: lnc-SNAPC3-11:8,

NONCODE: NONHSAT130246.2,

URS00000E0E97_9606 lncRNA 964 2

Ensembl: ENST00000416996 (view in UCSC) ,

LNCipedia: lnc-SNAPC3-11:3,

URS0000EF67F6_9606 lncRNA 1612 1

Ensembl: ENST00000671131 (view in UCSC) ,

URS00008B5527_9606 lncRNA 793 3

LncBook: HSALNT0146878,

LNCipedia: lnc-SNAPC3-11:6,

NONCODE: NONHSAT219226.1,

URS0000D5B944_9606 lncRNA 2028 2

LncBook: HSALNT0146874,

LNCipedia: lnc-SNAPC3-11:2,

ENSG00000225472 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225472 Gene

No ASD Table

Relevant External Links for ENSG00000225472 Gene

GeneLoc Exon Structure for
ENSG00000225472

No data available for mRNA/cDNA for ENSG00000225472 Gene

Expression for ENSG00000225472 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225472 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225472 Gene

This gene is overexpressed in Brain - Amygdala (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000225472: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225472 Gene

Orthologs for ENSG00000225472 Gene

Evolution for ENSG00000225472 Gene

ENSEMBL:
Gene Tree for ENSG00000225472 (if available)
TreeFam:
Gene Tree for ENSG00000225472 (if available)

No data available for Orthologs for ENSG00000225472 Gene

Paralogs for ENSG00000225472 Gene

No data available for Paralogs for ENSG00000225472 Gene

Variants for ENSG00000225472 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225472 Gene

Disorders for ENSG00000225472 Gene

No disorders were found for ENSG00000225472 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225472 Gene

Publications for ENSG00000225472 Gene

No publications were found for ENSG00000225472 Gene.

No data available for Mastermind for ENSG00000225472 Gene

Products for ENSG00000225472 Gene

Sources for ENSG00000225472 Gene