Aliases for ENSG00000225457 Gene

Subcategory (RNA class) for ENSG00000225457 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000225457 Gene

  • Novel Transcript 5
  • HSALNG0060633 169
  • NONHSAG048581 94
  • Lnc-LSMEM1-8 170
  • AC073346.1 5

External Ids for ENSG00000225457 Gene

Previous GeneCards Identifiers for ENSG00000225457 Gene

  • GC07P112740

Summaries for ENSG00000225457 Gene

GeneCards Summary for ENSG00000225457 Gene

ENSG00000225457 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225457 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225457 Gene

Genomics for ENSG00000225457 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000225457 Gene

Promoters and enhancers for ENSG00000225457 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J113099 Enhancer 0.8 Ensembl ENCODE 750.6 -0.7 -689 1.5 DACH1 SP1 ZSCAN4 PKNOX1 POLR2A RFX1 ZKSCAN1 DPF2 MAFK RCOR1 ENSG00000225457 SMIM30 GPR85
GH07J113013 Enhancer 0.6 dbSUPER 18.6 -86.2 -86151 2.7 CTCF CC2D1A RAD21 TEAD4 ARID2 REST SCRT2 FOXK2 SMC3 TEAD1 ENSG00000225457 piR-58297-448 ENSG00000234520
GH07J113141 Enhancer 0.9 Ensembl 11.6 +43.1 43138 4 SMARCE1 MYC CC2D1A ELF1 L3MBTL2 MAX TEAD4 ZKSCAN8 MLLT1 CBFA2T2 SMIM30 ENSG00000225457 GPR85 lnc-SMIM30-1 HSALNG0060642
GH07J112994 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE dbSUPER 6.2 -105.6 -105581 4.2 ZNF316 JUND EMSY ENSG00000234520 HRAT17 BMT2 ENSG00000225457 lnc-LSMEM1-7
GH07J113071 Enhancer 0.5 Ensembl 11.6 -29.0 -28962 1.4 MYC L3MBTL2 MAX ZNF24 E2F5 CEBPG CEBPB SMIM30 ENSG00000225457 ENSG00000279288 lnc-GPR85-1 piR-33422-404
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225457 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000225457 Gene

Genomic Locations for ENSG00000225457 Gene
chr7:113,100,663-113,146,330
(GRCh38/hg38)
Size:
45,668 bases
Orientation:
Plus strand
chr7:112,740,718-112,786,385
(GRCh37/hg19)
Size:
45,668 bases
Orientation:
Plus strand

Genomic View for ENSG00000225457 Gene

Genes around ENSG00000225457 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000225457 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225457 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225457 Gene

Proteins for ENSG00000225457 Gene

Post-translational modifications for ENSG00000225457 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225457 Gene

Domains & Families for ENSG00000225457 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225457 Gene

Function for ENSG00000225457 Gene

Phenotypes From GWAS Catalog for ENSG00000225457 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225457 Gene

Localization for ENSG00000225457 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225457 Gene

Pathways & Interactions for ENSG00000225457 Gene

PathCards logo

SuperPathways for ENSG00000225457 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225457 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000225457 Gene

Drugs & Compounds for ENSG00000225457 Gene

No Compound Related Data Available

Transcripts for ENSG00000225457 Gene

mRNA/cDNA for ENSG00000225457 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(4) LncBook transcripts :
(3) LNCipedia transcripts :
(5) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225457 Gene

No ASD Table

Relevant External Links for ENSG00000225457 Gene

GeneLoc Exon Structure for
ENSG00000225457

Expression for ENSG00000225457 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000225457 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225457 Gene

This gene is overexpressed in Kidney - Cortex (x31.7).
genes like me logo Genes that share expression patterns with ENSG00000225457: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225457 Gene

Orthologs for ENSG00000225457 Gene

Evolution for ENSG00000225457 Gene

ENSEMBL:
Gene Tree for ENSG00000225457 (if available)
TreeFam:
Gene Tree for ENSG00000225457 (if available)

No data available for Orthologs for ENSG00000225457 Gene

Paralogs for ENSG00000225457 Gene

No data available for Paralogs for ENSG00000225457 Gene

Variants for ENSG00000225457 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225457 Gene

Disorders for ENSG00000225457 Gene

No disorders were found for ENSG00000225457 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225457 Gene

Publications for ENSG00000225457 Gene

No publications were found for ENSG00000225457 Gene.

No data available for External Links for ENSG00000225457 Gene

Products for ENSG00000225457 Gene

Sources for ENSG00000225457 Gene