Aliases for ENSG00000225339 Gene

Subcategory (RNA class) for ENSG00000225339 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225339 Gene

  • Novel Transcript, Antisense To C6orf1 5
  • NONHSAG043629.2 91
  • HSALNG0049607 164
  • Lnc-HMGA1-2 165
  • AL354740.1 5

External Ids for ENSG00000225339 Gene

Previous GeneCards Identifiers for ENSG00000225339 Gene

  • GC06P034247
  • GC06P042759
  • GC06P043093
  • GC06P043314
  • GC06P046014
  • GC06P040101
  • GC06P041164
  • GC06P041846
  • GC06P042494

Summaries for ENSG00000225339 Gene

GeneCards Summary for ENSG00000225339 Gene

ENSG00000225339 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225339 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225339 Gene

Genomics for ENSG00000225339 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225339 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J034233 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -6.3 -6279 17.1 ZNF221 ARHGAP35 SP1 HNRNPL GATAD2A CTCF ZBTB33 ATF7 TEAD4 PRDM10 SMIM29 MIR6835 HMGA1 LEMD2 VPS52 TAF11 HCG25 WDR46 DAXX RPS10
GH06J034271 Enhancer 1.1 ENCODE dbSUPER 0.4 +24.4 24437 2.5 GATAD2A CTCF HNRNPL LEF1 IKZF1 ETV6 JUND DDX20 MTA2 PHF21A LEMD2 RPS10 RGL2 WDR46 DAXX TAF11 ZNF76 ITPR3 RPL35P2 piR-41076
GH06J034284 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.3 +36.7 36654 1.6 LEF1 IKZF1 JUND MTA2 ZNF24 DPF2 HDAC1 SOX6 TCF12 EP300 RF00017-5448 piR-59107 RPS10 LEMD2 RGL2 WDR46 DAXX TAF11 ZNF76 ITPR3
GH06J034276 Enhancer 0.9 ENCODE 0.3 +28.6 28615 0.9 ARHGAP35 GATAD2A LEF1 IKZF1 JUND MTA2 PKNOX1 MTA1 RXRB IRF2 RPS10 piR-41076 lnc-NUDT3-1 RPL35P2 SMIM29 ENSG00000225339 RF00017-5446 NUDT3
GH06J034281 Enhancer 0.9 dbSUPER 0.3 +33.9 33924 1.6 LEF1 IKZF1 JUND DDX20 MTA2 PKNOX1 MTA1 BRD9 DPF2 HDAC1 piR-35717 lnc-NUDT3-1 piR-39712 KIFC1 RPS10 LEMD2 NUDT3 SMIM29 ENSG00000225339 RF00017-5446
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225339 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225339 Gene

Genomic Locations for ENSG00000225339 Gene
chr6:34,248,535-34,286,768
(GRCh38/hg38)
Size:
38,234 bases
Orientation:
Plus strand
chr6:34,247,456-34,254,545
(GRCh37/hg19)
Size:
7,090 bases
Orientation:
Plus strand

Genomic View for ENSG00000225339 Gene

Genes around ENSG00000225339 on UCSC Golden Path with GeneCards custom track
ENSG00000225339 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225339 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225339 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225339 Gene

Proteins for ENSG00000225339 Gene

Post-translational modifications for ENSG00000225339 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225339 Gene

Domains & Families for ENSG00000225339 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225339 Gene

Function for ENSG00000225339 Gene

Phenotypes From GWAS Catalog for ENSG00000225339 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225339 Gene

Localization for ENSG00000225339 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225339 Gene

Pathways & Interactions for ENSG00000225339 Gene

PathCards logo

SuperPathways for ENSG00000225339 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225339 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225339 Gene

Drugs & Compounds for ENSG00000225339 Gene

No Compound Related Data Available

Transcripts for ENSG00000225339 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225339 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004C8325_9606 lncRNA 1230 4

Ensembl: ENST00000586413 (view in UCSC) ,

LncBook: HSALNT0105353,

LNCipedia: lnc-HMGA1-2:6,

NONCODE: NONHSAT112128.2,

URS00009B1F9B_9606 lncRNA 424 3

Ensembl: ENST00000593917 (view in UCSC) ,

LNCipedia: lnc-HMGA1-2:9,

NONCODE: NONHSAT207171.1,

URS0000EEDEEC_9606 lncRNA 3102 1

Ensembl: ENST00000659015 (view in UCSC) ,

URS0000EF3299_9606 lncRNA 2899 1

Ensembl: ENST00000586726 (view in UCSC) ,

URS00009C09DC_9606 lncRNA 290 3

LncBook: HSALNT0105336,

LNCipedia: lnc-HMGA1-2:8,

NONCODE: NONHSAT207170.1,

ENSG00000225339 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ENSG00000225339 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225339 Gene

No ASD Table

Relevant External Links for ENSG00000225339 Gene

GeneLoc Exon Structure for
ENSG00000225339

Expression for ENSG00000225339 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225339 Gene

mRNA expression in normal human tissues for ENSG00000225339 Gene
genes like me logo Genes that share expression patterns with ENSG00000225339: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225339 Gene

Orthologs for ENSG00000225339 Gene

Evolution for ENSG00000225339 Gene

ENSEMBL:
Gene Tree for ENSG00000225339 (if available)
TreeFam:
Gene Tree for ENSG00000225339 (if available)

No data available for Orthologs for ENSG00000225339 Gene

Paralogs for ENSG00000225339 Gene

No data available for Paralogs for ENSG00000225339 Gene

Variants for ENSG00000225339 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225339 Gene

Disorders for ENSG00000225339 Gene

Additional Disease Information for ENSG00000225339

No disorders were found for ENSG00000225339 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000225339 Gene

Publications for ENSG00000225339 Gene

No publications were found for ENSG00000225339 Gene.

No data available for Mastermind for ENSG00000225339 Gene

Products for ENSG00000225339 Gene

Sources for ENSG00000225339 Gene