Aliases for ENSG00000225315 Gene

Subcategory (RNA class) for ENSG00000225315 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225315 Gene

  • Novel Transcript, Antisense To MYOM3 5
  • NONHSAG000682.2 91
  • HSALNG0001686 164
  • Lnc-PNRC2-1 165
  • AL591178.1 5

External Ids for ENSG00000225315 Gene

Previous GeneCards Identifiers for ENSG00000225315 Gene

  • GC01P024367
  • GC01P024040

Summaries for ENSG00000225315 Gene

GeneCards Summary for ENSG00000225315 Gene

ENSG00000225315 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225315 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225315 Gene

Genomics for ENSG00000225315 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225315 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J024014 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.7 -2.4 -2351 9.3 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 RFX1 SOX13 IKZF1 NFKBIZ SRSF10 LINC01355 SRRM1 HNRNPR KDM1A PNRC2 CNR2 MYOM3-AS1 MYOM3 ENSG00000225315
GH01J024045 Enhancer 1 Ensembl ENCODE 0.3 +25.7 25680 3.6 PRDM10 ZNF629 ZNF692 JUND PRDM1 PKNOX1 PATZ1 ZNF239 SOX6 CEBPB PNRC2 SRSF10 SRRM1 ELOA LINC01355 HNRNPR RPL11 IL22RA1 LOC107984931 MYOM3-AS1
GH01J024070 Enhancer 1 ENCODE dbSUPER 0.3 +50.0 49994 1.6 GATAD2A CTCF PRDM10 ZNF692 JUND ZNF143 ZNF24 PATZ1 REST RAD21 PNRC2 MYOM3-AS1 lnc-IL22RA1-1 MYOM3 ENSG00000225315 SRSF10
GH01J024025 Enhancer 0.3 Ensembl 0.7 +4.1 4081 0.8 SPI1 SRSF10 ENSG00000225315 piR-35674-007 piR-35674-008 LOC105376863 MYOM3
GH01J024069 Enhancer 0.6 Ensembl dbSUPER 0.3 +45.9 45880 1.2 ZNF512 MTA2 MTA1 ZNF366 CEBPB MYOM3-AS1 PNRC2 MYOM3 lnc-IL22RA1-1 ENSG00000225315 SRSF10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225315 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225315 Gene

Genomic Locations for ENSG00000225315 Gene
chr1:24,021,720-24,086,799
(GRCh38/hg38)
Size:
65,080 bases
Orientation:
Plus strand
chr1:24,367,325-24,413,289
(GRCh37/hg19)
Size:
45,965 bases
Orientation:
Plus strand

Genomic View for ENSG00000225315 Gene

Genes around ENSG00000225315 on UCSC Golden Path with GeneCards custom track
ENSG00000225315 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225315 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225315 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225315 Gene

Proteins for ENSG00000225315 Gene

Post-translational modifications for ENSG00000225315 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225315 Gene

Domains & Families for ENSG00000225315 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225315 Gene

Function for ENSG00000225315 Gene

Phenotypes From GWAS Catalog for ENSG00000225315 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225315 Gene

Localization for ENSG00000225315 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225315 Gene

Pathways & Interactions for ENSG00000225315 Gene

PathCards logo

SuperPathways for ENSG00000225315 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225315 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225315 Gene

Drugs & Compounds for ENSG00000225315 Gene

No Compound Related Data Available

Transcripts for ENSG00000225315 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225315 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000018BCE5_9606 lncRNA 454 3

Ensembl: ENST00000439239 (view in UCSC) ,

LncBook: HSALNT0003254,

NONCODE: NONHSAT001579.2,

URS00008B5251_9606 lncRNA 648 3

LncBook: HSALNT0003251,

LNCipedia: lnc-PNRC2-1:2,

NONCODE: NONHSAT001577.2,

URS00008BB1C6_9606 lncRNA 577 3

LncBook: HSALNT0003252,

LNCipedia: lnc-PNRC2-1:4,

NONCODE: NONHSAT001578.2,

URS00008BFA38_9606 lncRNA 437 2

LncBook: HSALNT0003255,

NONCODE: NONHSAT001580.2,

URS00008B6E89_9606 lncRNA 369 1

LNCipedia: lnc-PNRC2-1:3,

ENSG00000225315 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225315 Gene

No ASD Table

Relevant External Links for ENSG00000225315 Gene

GeneLoc Exon Structure for
ENSG00000225315

No data available for mRNA/cDNA for ENSG00000225315 Gene

Expression for ENSG00000225315 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225315 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225315 Gene

This gene is overexpressed in Muscle - Skeletal (x23.5), Heart - Left Ventricle (x16.4), and Heart - Atrial Appendage (x8.7).
genes like me logo Genes that share expression patterns with ENSG00000225315: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225315 Gene

Orthologs for ENSG00000225315 Gene

Evolution for ENSG00000225315 Gene

ENSEMBL:
Gene Tree for ENSG00000225315 (if available)
TreeFam:
Gene Tree for ENSG00000225315 (if available)

No data available for Orthologs for ENSG00000225315 Gene

Paralogs for ENSG00000225315 Gene

No data available for Paralogs for ENSG00000225315 Gene

Variants for ENSG00000225315 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225315 Gene

Disorders for ENSG00000225315 Gene

No disorders were found for ENSG00000225315 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225315 Gene

Publications for ENSG00000225315 Gene

No publications were found for ENSG00000225315 Gene.

No data available for Mastermind for ENSG00000225315 Gene

Products for ENSG00000225315 Gene

Sources for ENSG00000225315 Gene