Aliases for ENSG00000225280 Gene

Subcategory (RNA class) for ENSG00000225280 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225280 Gene

  • Novel Transcript, Antisense To NKX2-4 5
  • NONHSAG031420.2 91
  • HSALNG0129109 164
  • AL158013.1 5
  • Lnc-XRN2-1 165

External Ids for ENSG00000225280 Gene

Summaries for ENSG00000225280 Gene

GeneCards Summary for ENSG00000225280 Gene

ENSG00000225280 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225280 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225280 Gene

Genomics for ENSG00000225280 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225280 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J021396 Promoter 0.7 Ensembl 600.7 -0.4 -393 1 EZH2 ARNT ZBTB26 ZBTB17 ZFHX2 GLIS1 ZFX EGR2 L3MBTL2 ZBTB8A ENSG00000225280 LOC105372558 NKX2-4 HSALNG0129108 XRN2
GH20J021090 Enhancer 1.3 UCNEbase Ensembl ENCODE 11.1 -306.8 -306793 3 ZNF629 ZNF692 ZSCAN4 SOX6 SCRT2 ZNF792 ZBTB44 ZNF639 ZXDB ZEB1 ENSG00000283405 ENSG00000225280 NKX2-4 KIZ LINC00237 RALGAPA2
GH20J021322 Enhancer 1 Ensembl ENCODE 10.4 -72.3 -72293 6.4 ZNF629 LEF1 IKZF1 JUND MTA2 PKNOX1 BRD9 DPF2 HDAC1 SOX6 NKX2-4 ENSG00000225280 KIZ RF00017-3538 XRN2 lnc-KIZ-9
GH20J021360 Enhancer 0.6 Ensembl ENCODE 11.3 -36.1 -36093 2.8 CEBPB RBM22 ARNT SPI1 PRDM6 ENSG00000225280 NKX2-4 XRN2 KIZ RF00017-3541 HSALNG0129108
GH20J021214 Enhancer 0.6 Ensembl ENCODE 10 -181.8 -181793 4.2 PHF8 NANOG SP1 POU5F1 JUND KIZ ENSG00000225280 NKX2-4 KIZ-AS1 RPS15AP1 XRN2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225280 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225280 Gene

Genomic Locations for ENSG00000225280 Gene
chr20:21,397,294-21,443,406
(GRCh38/hg38)
Size:
46,113 bases
Orientation:
Plus strand
chr20:21,378,456-21,381,029
(GRCh37/hg19)
Size:
2,574 bases
Orientation:
Plus strand

Genomic View for ENSG00000225280 Gene

Genes around ENSG00000225280 on UCSC Golden Path with GeneCards custom track
ENSG00000225280 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225280 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225280 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225280 Gene

Proteins for ENSG00000225280 Gene

Post-translational modifications for ENSG00000225280 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225280 Gene

Domains & Families for ENSG00000225280 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225280 Gene

Function for ENSG00000225280 Gene

Phenotypes From GWAS Catalog for ENSG00000225280 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225280 Gene

Localization for ENSG00000225280 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225280 Gene

Pathways & Interactions for ENSG00000225280 Gene

PathCards logo

SuperPathways for ENSG00000225280 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225280 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225280 Gene

Drugs & Compounds for ENSG00000225280 Gene

No Compound Related Data Available

Transcripts for ENSG00000225280 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225280 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000613B89_9606 lncRNA 520 4

Ensembl: ENST00000419666 (view in UCSC) ,

LncBook: HSALNT0265305,

LNCipedia: lnc-XRN2-1:2,

NONCODE: NONHSAT078938.2,

URS0000EF5AE2_9606 lncRNA 1066 1

Ensembl: ENST00000660673 (view in UCSC) ,

URS00001BFBBD_9606 lncRNA 199 1

Ensembl: ENST00000552439 (view in UCSC) ,

URS00008BD591_9606 lncRNA 509 3

LncBook: HSALNT0265304,

LNCipedia: lnc-XRN2-1:3,

NONCODE: NONHSAT078937.2,

URS0000D56D98_9606 lncRNA 381 2

LncBook: HSALNT0265301,

LNCipedia: lnc-XRN2-1:15,

ENSG00000225280 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225280 Gene

No ASD Table

Relevant External Links for ENSG00000225280 Gene

GeneLoc Exon Structure for
ENSG00000225280

No data available for mRNA/cDNA for ENSG00000225280 Gene

Expression for ENSG00000225280 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225280 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225280 Gene

This gene is overexpressed in Testis (x25.7) and Brain - Hippocampus (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000225280: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225280 Gene

Orthologs for ENSG00000225280 Gene

Evolution for ENSG00000225280 Gene

ENSEMBL:
Gene Tree for ENSG00000225280 (if available)
TreeFam:
Gene Tree for ENSG00000225280 (if available)

No data available for Orthologs for ENSG00000225280 Gene

Paralogs for ENSG00000225280 Gene

No data available for Paralogs for ENSG00000225280 Gene

Variants for ENSG00000225280 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225280 Gene

Disorders for ENSG00000225280 Gene

Additional Disease Information for ENSG00000225280

No disorders were found for ENSG00000225280 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000225280 Gene

Publications for ENSG00000225280 Gene

No publications were found for ENSG00000225280 Gene.

No data available for Mastermind for ENSG00000225280 Gene

Products for ENSG00000225280 Gene

Sources for ENSG00000225280 Gene