Aliases for ENSG00000225243 Gene

Subcategory (RNA class) for ENSG00000225243 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ENSG00000225243 Gene

  • Novel Transcript, Antisense To FMO2 5
  • NONHSAG003441.2 91
  • HSALNG0008404 164
  • AL021026.1 5
  • Lnc-MYOC-1 165

External Ids for ENSG00000225243 Gene

Previous GeneCards Identifiers for ENSG00000225243 Gene

  • GC01M171168

Summaries for ENSG00000225243 Gene

GeneCards Summary for ENSG00000225243 Gene

ENSG00000225243 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225243 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225243 Gene

Genomics for ENSG00000225243 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225243 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J171217 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.4 +7.5 7528 4.7 TEAD4 PRDM1 POLR2A RUNX3 ETS1 MAFK SMARCA4 TAF1 SP1 EGR1 MN309014 FMO2 ENSG00000231424 FMO3 MROH9 ENSG00000225243 FMO1 LOC105371611
GH01J171209 Enhancer 0.8 Ensembl ENCODE 0.4 +16.1 16064 5.4 CTCF FOXA1 SP1 FOXA2 USF1 YY1 ZBTB33 JUND GATA3 SPI1 FMO2 FMO3 MN309014 ENSG00000225243 FMO1 LOC105371611 ENSG00000231424
GH01J171207 Enhancer 0.4 Ensembl 0.4 +20.3 20288 0.2 SP1 HNF4A RXRA MIXL1 FMO2 MN309014 ENSG00000225243 FMO1 ENSG00000231424 LOC105371611
GH01J171201 Enhancer 0.4 FANTOM5 0.3 +25.9 25855 0.2 ZSCAN5C NR2F1 FMO2 FMO3 MROH9 MN309014 ENSG00000225243 ENSG00000231424 FMO1 LOC105371611
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225243 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225243 Gene

Genomic Locations for ENSG00000225243 Gene
chr1:171,199,244-171,227,789
(GRCh38/hg38)
Size:
28,546 bases
Orientation:
Minus strand
chr1:171,168,383-171,196,927
(GRCh37/hg19)
Size:
28,545 bases
Orientation:
Minus strand

Genomic View for ENSG00000225243 Gene

Genes around ENSG00000225243 on UCSC Golden Path with GeneCards custom track
ENSG00000225243 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225243 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225243 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225243 Gene

Proteins for ENSG00000225243 Gene

Post-translational modifications for ENSG00000225243 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225243 Gene

Domains & Families for ENSG00000225243 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225243 Gene

Function for ENSG00000225243 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225243 Gene

Localization for ENSG00000225243 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225243 Gene

Pathways & Interactions for ENSG00000225243 Gene

PathCards logo

SuperPathways for ENSG00000225243 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225243 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225243 Gene

Drugs & Compounds for ENSG00000225243 Gene

No Compound Related Data Available

Transcripts for ENSG00000225243 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225243 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001E1A47_9606 lncRNA 442 4

Ensembl: ENST00000445909 (view in UCSC) ,

LncBook: HSALNT0017432,

LNCipedia: lnc-MYOC-1:2,

NONCODE: NONHSAT007520.2,

URS00003C7992_9606 lncRNA 407 4

Ensembl: ENST00000445290 (view in UCSC) ,

LncBook: HSALNT0017433,

LNCipedia: lnc-MYOC-1:1,

NONCODE: NONHSAT007521.2,

URS00001CFE5C_9606 lncRNA 658 3

Ensembl: ENST00000422841 (view in UCSC) ,

LNCipedia: lnc-MYOC-1:3,

NONCODE: NONHSAT007519.2,

URS00009C0CE6_9606 lncRNA 796 2

LncBook: HSALNT0017427,

NONCODE: NONHSAT152532.1,

URS00009B2A07_9606 lncRNA 1132 1

NONCODE: NONHSAT152533.1,

ENSG00000225243 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225243 Gene

No ASD Table

Relevant External Links for ENSG00000225243 Gene

GeneLoc Exon Structure for
ENSG00000225243

No data available for mRNA/cDNA for ENSG00000225243 Gene

Expression for ENSG00000225243 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225243 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225243 Gene

This gene is overexpressed in Artery - Aorta (x7.1) and Lung (x5.1).
genes like me logo Genes that share expression patterns with ENSG00000225243: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225243 Gene

Orthologs for ENSG00000225243 Gene

Evolution for ENSG00000225243 Gene

ENSEMBL:
Gene Tree for ENSG00000225243 (if available)
TreeFam:
Gene Tree for ENSG00000225243 (if available)

No data available for Orthologs for ENSG00000225243 Gene

Paralogs for ENSG00000225243 Gene

No data available for Paralogs for ENSG00000225243 Gene

Variants for ENSG00000225243 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225243 Gene

Disorders for ENSG00000225243 Gene

Additional Disease Information for ENSG00000225243

No disorders were found for ENSG00000225243 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000225243 Gene

Publications for ENSG00000225243 Gene

No publications were found for ENSG00000225243 Gene.

No data available for Mastermind for ENSG00000225243 Gene

Products for ENSG00000225243 Gene

Sources for ENSG00000225243 Gene