Aliases for ENSG00000225233 Gene

Subcategory (RNA class) for ENSG00000225233 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225233 Gene

  • Novel Transcript 5
  • NONHSAG004258.2 91
  • HSALNG0010442 164
  • Lnc-RPS6KC1-1 165
  • AL592402.1 5

External Ids for ENSG00000225233 Gene

Previous GeneCards Identifiers for ENSG00000225233 Gene

  • GC01P213665

Summaries for ENSG00000225233 Gene

GeneCards Summary for ENSG00000225233 Gene

ENSG00000225233 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225233 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225233 Gene

Genomics for ENSG00000225233 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225233 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J213507 Enhancer 0.8 UCNEbase Ensembl 0.4 +15.9 15932 0.8 CEBPA CEBPB CEBPG NFIL3 NANOG HLF POU5F1 RF00994-085 ENSG00000225233 LOC105372912 RPS6KC1 PROX1
GH01J213464 Enhancer 0.6 Ensembl ENCODE 0.3 -26.4 -26445 1.6 RFX1 GATA3 FOS piR-60051-004 ENSG00000225233 LOC105372912 RPS6KC1 PROX1
GH01J213474 Enhancer 0.5 FANTOM5 Ensembl 0.4 -17.8 -17756 1.4 NFIA ENSG00000225233 piR-60051-004 LOC105372912 RPS6KC1 PROX1
GH01J213568 Enhancer 0.7 dbSUPER 0.2 +77.2 77210 0.6 HNRNPL GATAD2A SOX13 RCOR2 ZNF7 RBFOX2 RXRB CEBPA TCF7 FOXA2 RF01061-022 RF00994-085 ENSG00000225233 LOC105372912 PROX1 RPS6KC1
GH01J213569 Enhancer 0.8 ENCODE dbSUPER 0.2 +77.9 77944 0.2 CEBPA SOX13 TCF7 CREM ZGPAT BCL6 CHD4 NFIL3 ZNF3 KDM1A RF01061-022 RF00994-085 ENSG00000225233 LOC105372912 PROX1 RPS6KC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225233 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225233 Gene

Genomic Locations for ENSG00000225233 Gene
chr1:213,491,869-213,579,267
(GRCh38/hg38)
Size:
87,399 bases
Orientation:
Plus strand
chr1:213,665,644-213,719,790
(GRCh37/hg19)
Size:
54,147 bases
Orientation:
Plus strand

Genomic View for ENSG00000225233 Gene

Genes around ENSG00000225233 on UCSC Golden Path with GeneCards custom track
ENSG00000225233 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225233 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225233 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225233 Gene

Proteins for ENSG00000225233 Gene

Post-translational modifications for ENSG00000225233 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225233 Gene

Domains & Families for ENSG00000225233 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225233 Gene

Function for ENSG00000225233 Gene

Phenotypes From GWAS Catalog for ENSG00000225233 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225233 Gene

Localization for ENSG00000225233 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225233 Gene

Pathways & Interactions for ENSG00000225233 Gene

PathCards logo

SuperPathways for ENSG00000225233 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225233 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225233 Gene

Drugs & Compounds for ENSG00000225233 Gene

No Compound Related Data Available

Transcripts for ENSG00000225233 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225233 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEFEA4_9606 lncRNA 942 1

Ensembl: ENST00000417161 (view in UCSC) ,

URS00004681D5_9606 lncRNA 440 3

LncBook: HSALNT0021587,

LNCipedia: lnc-RPS6KC1-1:1,

NONCODE: NONHSAT009423.2,

URS00009BF5C1_9606 lncRNA 485 2

LncBook: HSALNT0021588,

NONCODE: NONHSAT150483.1,

URS0000EA297F_9606 lncRNA 1189 1

LncBook: HSALNT0021585,

ENSG00000225233 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225233 Gene

No ASD Table

Relevant External Links for ENSG00000225233 Gene

GeneLoc Exon Structure for
ENSG00000225233

No data available for mRNA/cDNA for ENSG00000225233 Gene

Expression for ENSG00000225233 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225233 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225233 Gene

This gene is overexpressed in Testis (x48.4) and Pituitary (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000225233: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225233 Gene

Orthologs for ENSG00000225233 Gene

Evolution for ENSG00000225233 Gene

ENSEMBL:
Gene Tree for ENSG00000225233 (if available)
TreeFam:
Gene Tree for ENSG00000225233 (if available)

No data available for Orthologs for ENSG00000225233 Gene

Paralogs for ENSG00000225233 Gene

No data available for Paralogs for ENSG00000225233 Gene

Variants for ENSG00000225233 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225233 Gene

Disorders for ENSG00000225233 Gene

No disorders were found for ENSG00000225233 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225233 Gene

Publications for ENSG00000225233 Gene

No publications were found for ENSG00000225233 Gene.

No data available for Mastermind for ENSG00000225233 Gene

Products for ENSG00000225233 Gene

Sources for ENSG00000225233 Gene