Aliases for ENSG00000225216 Gene

Subcategory (RNA class) for ENSG00000225216 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225216 Gene

  • Novel Transcript 5
  • NONHSAG030324.2 91
  • HSALNG0021745 164
  • Lnc-INO80D-10 165
  • AC007362.1 5

External Ids for ENSG00000225216 Gene

Previous GeneCards Identifiers for ENSG00000225216 Gene

  • GC02M206624

Summaries for ENSG00000225216 Gene

GeneCards Summary for ENSG00000225216 Gene

ENSG00000225216 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225216 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225216 Gene

Genomics for ENSG00000225216 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225216 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J205762 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.3 326 2.8 CTCF ZBTB33 TEAD4 RFX1 POLR2A FOXJ2 SCRT2 RAD21 BMI1 ESR1 ENSG00000225216 HSALNG0021744 NRP2 INO80D
GH02J205765 Enhancer 0.3 Ensembl dbSUPER 600.7 -1.3 -1294 0.2 ENSG00000225216 lnc-PARD3B-4 NRP2 INO80D
GH02J205678 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 16.6 +80.2 80169 11.4 CTCF TEAD4 PRDM10 ZNF692 PRDM1 ZNF143 ZIC2 ZSCAN4 POLR2A PATZ1 NRP2 lnc-INO80D-8 ENSG00000225216 HSALNG0021744 INO80D
GH02J205711 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 16 +50.0 50006 6 RNF2 CTCF KDM1A STAT3 RELA IKZF2 YY1 EED DPF2 RELB NRP2 ENSG00000225216 INO80D HSALNG0021744
GH02J205729 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 18 +32.0 31997 6.8 REST CEBPB SP1 JUND EZH2 NFE2 FOXA2 TGIF2 ATF3 NR3C1 ENSG00000225216 NRP2 ADAM23 HSALNG0021744 INO80D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225216 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225216 Gene

Genomic Locations for ENSG00000225216 Gene
chr2:205,756,469-205,764,007
(GRCh38/hg38)
Size:
7,539 bases
Orientation:
Minus strand
chr2:206,621,193-206,628,730
(GRCh37/hg19)
Size:
7,538 bases
Orientation:
Minus strand

Genomic View for ENSG00000225216 Gene

Genes around ENSG00000225216 on UCSC Golden Path with GeneCards custom track
ENSG00000225216 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225216 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225216 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225216 Gene

Proteins for ENSG00000225216 Gene

Post-translational modifications for ENSG00000225216 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225216 Gene

Domains & Families for ENSG00000225216 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225216 Gene

Function for ENSG00000225216 Gene

Phenotypes From GWAS Catalog for ENSG00000225216 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225216 Gene

Localization for ENSG00000225216 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225216 Gene

Pathways & Interactions for ENSG00000225216 Gene

PathCards logo

SuperPathways for ENSG00000225216 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225216 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225216 Gene

Drugs & Compounds for ENSG00000225216 Gene

No Compound Related Data Available

Transcripts for ENSG00000225216 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225216 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000081201B_9606 lncRNA 606 4

Ensembl: ENST00000625831 (view in UCSC) ,

LncBook: HSALNT0046172,

LNCipedia: lnc-INO80D-10:6,

NONCODE: NONHSAT186229.1,

URS0000811CEA_9606 lncRNA 597 4

Ensembl: ENST00000628086 (view in UCSC) ,

LncBook: HSALNT0046169,

LNCipedia: lnc-INO80D-10:8,

NONCODE: NONHSAT186226.1,

URS0000811B16_9606 lncRNA 585 4

Ensembl: ENST00000626426 (view in UCSC) ,

LncBook: HSALNT0046171,

LNCipedia: lnc-INO80D-10:13,

NONCODE: NONHSAT186228.1,

URS0000146B9A_9606 lncRNA 553 4

Ensembl: ENST00000423425 (view in UCSC) ,

LncBook: HSALNT0046174,

LNCipedia: lnc-INO80D-10:1,

NONCODE: NONHSAT076523.2,

URS00008119F2_9606 lncRNA 542 4

Ensembl: ENST00000628604 (view in UCSC) ,

LncBook: HSALNT0046170,

LNCipedia: lnc-INO80D-10:15,

NONCODE: NONHSAT186227.1,

ENSG00000225216 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225216 Gene

No ASD Table

Relevant External Links for ENSG00000225216 Gene

GeneLoc Exon Structure for
ENSG00000225216

No data available for mRNA/cDNA for ENSG00000225216 Gene

Expression for ENSG00000225216 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225216 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225216 Gene

This gene is overexpressed in Esophagus - Muscularis (x5.5), Colon - Sigmoid (x4.8), and Esophagus - Gastroesophageal Junction (x4.7).
genes like me logo Genes that share expression patterns with ENSG00000225216: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225216 Gene

Orthologs for ENSG00000225216 Gene

Evolution for ENSG00000225216 Gene

ENSEMBL:
Gene Tree for ENSG00000225216 (if available)
TreeFam:
Gene Tree for ENSG00000225216 (if available)

No data available for Orthologs for ENSG00000225216 Gene

Paralogs for ENSG00000225216 Gene

No data available for Paralogs for ENSG00000225216 Gene

Variants for ENSG00000225216 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225216 Gene

Disorders for ENSG00000225216 Gene

Additional Disease Information for ENSG00000225216

No disorders were found for ENSG00000225216 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000225216 Gene

Publications for ENSG00000225216 Gene

No publications were found for ENSG00000225216 Gene.

No data available for Mastermind for ENSG00000225216 Gene

Products for ENSG00000225216 Gene

Sources for ENSG00000225216 Gene