ENSG00000225213 Gene (RNA Gene)

 

GC10M016721
GIFtS:
5

Aliases for ENSG00000225213 Gene

Subcategory (RNA class) for ENSG00000225213 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000225213 Gene

  • Novel Transcript, Sense Intronic To RSU1 5
  • NONHSAG005317 92
  • HSALNG0076411 167
  • AC073367.1 5
  • Lnc-CUBN-1 168

External Ids for ENSG00000225213 Gene

Previous GeneCards Identifiers for ENSG00000225213 Gene

  • GC10P016763
  • GC10M016763

Summaries for ENSG00000225213 Gene

GeneCards Summary for ENSG00000225213 Gene

ENSG00000225213 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225213 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225213 Gene

Genomics for ENSG00000225213 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000225213 Gene

Promoters and enhancers for ENSG00000225213 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J017226 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -483.2 -483160 10.6 HNRNPK ZNF217 CTCF ZSCAN5C TCF12 NRF1 ZNF300 SP1 RBAK GTF2E2 TRDMT1 VIM-AS1 NONHSAG005322.2 VIM ENSG00000229190 ENSG00000225213 ENSG00000273153 RSU1 ENSG00000234961
GH10J016612 Enhancer 0.5 ENCODE 10.1 +135.9 135940 0.2 REST AFF1 MIER1 EHMT2 CEBPB MIER2 ZNF143 ZNF766 ENSG00000225213 C1QL3 MINDY3 piR-41306-025 lnc-PTER-3 RSU1
GH10J016597 Enhancer 0.4 Ensembl 10.6 +151.0 150976 0.4 DPF2 SMARCE1 ARID1B SMARCC2 ATF1 ENSG00000225213 lnc-PTER-3 piR-41306-025 RSU1
GH10J016729 Enhancer 0.3 Ensembl 8.3 +18.6 18576 0.4 EGR1 HMBOX1 ENSG00000225213 HSALNG0076410 RSU1
GH10J016663 Enhancer 0.2 Ensembl 11 +85.1 85076 0.6 ENSG00000225213 piR-41306-025 HSALNG0076410 RSU1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225213 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000225213 Gene

Genomic Locations for ENSG00000225213 Gene
chr10:16,721,352-16,748,377
(GRCh38/hg38)
Size:
27,026 bases
Orientation:
Minus strand
chr10:16,763,351-16,790,376
(GRCh37/hg19)
Size:
27,026 bases
Orientation:
Minus strand

Genomic View for ENSG00000225213 Gene

Genes around ENSG00000225213 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000225213 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225213 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000225213 Gene

Proteins for ENSG00000225213 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000225213 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225213 Gene

Domains & Families for ENSG00000225213 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225213 Gene

Function for ENSG00000225213 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000225213 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225213 Gene

Localization for ENSG00000225213 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225213 Gene

Pathways & Interactions for ENSG00000225213 Gene

PathCards logo

SuperPathways for ENSG00000225213 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000225213 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225213 Gene

Drugs & Compounds for ENSG00000225213 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000225213 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000225213 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225213 Gene

No ASD Table

Relevant External Links for ENSG00000225213 Gene

GeneLoc Exon Structure for
ENSG00000225213

Expression for ENSG00000225213 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225213 Gene

mRNA expression in normal human tissues for ENSG00000225213 Gene
mRNA expression by GTEx for ENSG00000225213 Gene
genes like me logo Genes that share expression patterns with ENSG00000225213: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225213 Gene

Orthologs for ENSG00000225213 Gene

Evolution for ENSG00000225213 Gene

ENSEMBL:
Gene Tree for ENSG00000225213 (if available)
TreeFam:
Gene Tree for ENSG00000225213 (if available)

No data available for Orthologs for ENSG00000225213 Gene

Paralogs for ENSG00000225213 Gene

No data available for Paralogs for ENSG00000225213 Gene

Variants for ENSG00000225213 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225213 Gene

Disorders for ENSG00000225213 Gene

No disorders were found for ENSG00000225213 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225213 Gene

Publications for ENSG00000225213 Gene

No publications were found for ENSG00000225213 Gene.

No data available for Mastermind for ENSG00000225213 Gene

Products for ENSG00000225213 Gene

Sources for ENSG00000225213 Gene