Aliases for ENSG00000225205 Gene

Subcategory (RNA class) for ENSG00000225205 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225205 Gene

  • Novel Transcript 5
  • NONHSAG029832.2 91
  • HSALNG0020385 164
  • AC078883.1 5
  • Lnc-DLX2-4 165

External Ids for ENSG00000225205 Gene

Previous GeneCards Identifiers for ENSG00000225205 Gene

  • GC02M173345

Summaries for ENSG00000225205 Gene

GeneCards Summary for ENSG00000225205 Gene

ENSG00000225205 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000225205 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for ENSG00000225205 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000225205 Gene

Genomics for ENSG00000225205 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225205 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J172552 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +1.1 1121 6.7 RNF2 ARHGAP35 SP1 CREB1 GATAD2A HNRNPL PRDM10 ZNF629 ZNF512 LEF1 PDK1 ENSG00000225205 METAP1D ENSG00000199866 RAPGEF4
GH02J172513 Promoter/Enhancer 1.2 FANTOM5 Ensembl ENCODE 12.2 +42.2 42153 1.1 IKZF1 HDAC1 SOX6 EP300 ZNF766 CTBP1 FOXK2 ZBTB11 AFF1 NCOR1 PDK1 ENSG00000225205 RF00017-3365 lnc-PDK1-2 ITGA6
GH02J172578 Enhancer 0.6 dbSUPER 11.8 -22.8 -22797 2.1 PRDM1 CBX3 NFE2 XRCC3 TRIM28 TRIM24 ZC3H8 SKIL ZNF507 ZEB2 PDK1 ENSG00000225205 METAP1D piR-52079-115 piR-59928-077 RAPGEF4
GH02J172489 Enhancer 0.6 Ensembl 11.2 +66.7 66695 2.2 CEBPB TEAD1 SAP130 ATF4 HOMEZ MXI1 MAFK KDM1A TEAD3 SOX5 ITGA6-AS1 ITGA6 PDK1 ENSG00000225205 ENSG00000226963 RF00017-3365
GH02J172495 Enhancer 0.5 FANTOM5 ENCODE 11.6 +60.3 60264 2 SPI1 PDK1 ENSG00000225205 ITGA6-AS1 ITGA6 RF00017-3365
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225205 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225205 Gene

Genomic Locations for ENSG00000225205 Gene
chr2:172,477,463-172,556,596
(GRCh38/hg38)
Size:
79,134 bases
Orientation:
Minus strand

Genomic View for ENSG00000225205 Gene

Genes around ENSG00000225205 on UCSC Golden Path with GeneCards custom track
ENSG00000225205 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225205 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225205 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225205 Gene

Proteins for ENSG00000225205 Gene

Post-translational modifications for ENSG00000225205 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225205 Gene

Domains & Families for ENSG00000225205 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225205 Gene

Function for ENSG00000225205 Gene

Phenotypes From GWAS Catalog for ENSG00000225205 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225205 Gene

Localization for ENSG00000225205 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225205 Gene

Pathways & Interactions for ENSG00000225205 Gene

PathCards logo

SuperPathways for ENSG00000225205 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225205 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225205 Gene

Drugs & Compounds for ENSG00000225205 Gene

No Compound Related Data Available

Transcripts for ENSG00000225205 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225205 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005F7B86_9606 lncRNA 1397 4

Ensembl: ENST00000450443 (view in UCSC) ,

LncBook: HSALNT0043155,

LNCipedia: lnc-DLX2-4:1,

NONCODE: NONHSAT075509.2,

URS00005E2844_9606 lncRNA 654 4

Ensembl: ENST00000416080 (view in UCSC) ,

LncBook: HSALNT0043158,

LNCipedia: lnc-DLX2-4:5,

NONCODE: NONHSAT075511.2,

URS00000BE4AA_9606 lncRNA 950 3

Ensembl: ENST00000442417 (view in UCSC) ,

LNCipedia: lnc-DLX2-4:2,

NONCODE: NONHSAT075507.2,

URS000048785A_9606 lncRNA 474 3

Ensembl: ENST00000436922 (view in UCSC) ,

LNCipedia: lnc-DLX2-4:4,

NONCODE: NONHSAT075514.2,

URS000023C882_9606 lncRNA 414 3

Ensembl: ENST00000444919 (view in UCSC) ,

LNCipedia: lnc-DLX2-4:3,

NONCODE: NONHSAT075513.2,

ENSG00000225205 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225205 Gene

No ASD Table

Relevant External Links for ENSG00000225205 Gene

GeneLoc Exon Structure for
ENSG00000225205

No data available for mRNA/cDNA for ENSG00000225205 Gene

Expression for ENSG00000225205 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225205 Gene

genes like me logo Genes that share expression patterns with ENSG00000225205: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225205 Gene

Orthologs for ENSG00000225205 Gene

Evolution for ENSG00000225205 Gene

ENSEMBL:
Gene Tree for ENSG00000225205 (if available)
TreeFam:
Gene Tree for ENSG00000225205 (if available)

No data available for Orthologs for ENSG00000225205 Gene

Paralogs for ENSG00000225205 Gene

No data available for Paralogs for ENSG00000225205 Gene

Variants for ENSG00000225205 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225205 Gene

Disorders for ENSG00000225205 Gene

Additional Disease Information for ENSG00000225205

No disorders were found for ENSG00000225205 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000225205 Gene

Publications for ENSG00000225205 Gene

No publications were found for ENSG00000225205 Gene.

No data available for Mastermind for ENSG00000225205 Gene

Products for ENSG00000225205 Gene

Sources for ENSG00000225205 Gene