Aliases for ENSG00000225172 Gene

Subcategory (RNA class) for ENSG00000225172 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225172 Gene

  • Novel Transcript 5
  • NONHSAG003887.2 91
  • HSALNG0009524 164
  • Lnc-PTPRC-1 165
  • AC096631.1 5

External Ids for ENSG00000225172 Gene

Previous GeneCards Identifiers for ENSG00000225172 Gene

  • GC01P198952

Summaries for ENSG00000225172 Gene

GeneCards Summary for ENSG00000225172 Gene

ENSG00000225172 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225172 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225172 Gene

Genomics for ENSG00000225172 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225172 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J198971 Enhancer 0.2 dbSUPER 613.9 +0.6 614 4.3 ENSG00000225172 LOC105371679 PTPRC
GH01J198929 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.7 -39.9 -39911 9.7 SP1 CREB1 ATF7 PRDM10 ZNF629 REST ZNF692 POLR2A FOS ZHX2 MIR181A1HG ENSG00000225172 PTPRC MN296905
GH01J198888 Enhancer 1.1 Ensembl ENCODE dbSUPER 13.1 -81.9 -81879 6.2 FOXA1 PRDM1 RFX1 POLR2A ZNF792 ZBTB44 TCF7L2 BMI1 CEBPB FOS lnc-PTPRC-5 ENSG00000225172 MIR181A1 MIR181B1 lnc-PTPRC-6 MIR181A1HG PTPRC
GH01J199009 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +36.6 36569 2.7 ZSCAN4 RCOR1 RUNX3 BCL11A HDGF JUNB BATF ATF2 TBX21 POLR2A ENSG00000225172 lnc-PTPRC-9 LINC01221 LINC01222 PTPRC
GH01J198879 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 7.5 -92.4 -92368 3.2 CEBPG CREB1 ZNF629 ZNF692 ZHX2 PRDM1 ZNF501 ZNF341 SCRT2 RBAK MIR181A1 MIR181B1 ENSG00000225172 PTPRC MN296902 lnc-PTPRC-5 MIR181A1HG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225172 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225172 Gene

Genomic Locations for ENSG00000225172 Gene
chr1:198,973,379-198,985,506
(GRCh38/hg38)
Size:
12,128 bases
Orientation:
Plus strand
chr1:198,952,450-198,954,529
(GRCh37/hg19)
Size:
2,080 bases
Orientation:
Plus strand

Genomic View for ENSG00000225172 Gene

Genes around ENSG00000225172 on UCSC Golden Path with GeneCards custom track
ENSG00000225172 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225172 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225172 Gene

Proteins for ENSG00000225172 Gene

Post-translational modifications for ENSG00000225172 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225172 Gene

Domains & Families for ENSG00000225172 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225172 Gene

Function for ENSG00000225172 Gene

Phenotypes From GWAS Catalog for ENSG00000225172 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225172 Gene

Localization for ENSG00000225172 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225172 Gene

Pathways & Interactions for ENSG00000225172 Gene

PathCards logo

SuperPathways for ENSG00000225172 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225172 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225172 Gene

Drugs & Compounds for ENSG00000225172 Gene

No Compound Related Data Available

Transcripts for ENSG00000225172 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225172 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000053426D_9606 lncRNA 917 4

Ensembl: ENST00000440162 (view in UCSC) ,

LncBook: HSALNT0019717,

LNCipedia: lnc-PTPRC-1:2,

NONCODE: NONHSAT008669.2,

URS0000258C21_9606 lncRNA 835 3

Ensembl: ENST00000422480 (view in UCSC) ,

LNCipedia: lnc-PTPRC-1:1,

NONCODE: NONHSAT008668.2,

URS0000EEB200_9606 lncRNA 1152 1

Ensembl: ENST00000658052 (view in UCSC) ,

URS0000EF5A6C_9606 lncRNA 1098 1

Ensembl: ENST00000661315 (view in UCSC) ,

ENSG00000225172 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225172 Gene

No ASD Table

Relevant External Links for ENSG00000225172 Gene

GeneLoc Exon Structure for
ENSG00000225172

No data available for mRNA/cDNA for ENSG00000225172 Gene

Expression for ENSG00000225172 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225172 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225172 Gene

This gene is overexpressed in Testis (x17.2), Brain - Nucleus accumbens (basal ganglia) (x6.1), and Brain - Putamen (basal ganglia) (x4.7).
genes like me logo Genes that share expression patterns with ENSG00000225172: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225172 Gene

Orthologs for ENSG00000225172 Gene

Evolution for ENSG00000225172 Gene

ENSEMBL:
Gene Tree for ENSG00000225172 (if available)
TreeFam:
Gene Tree for ENSG00000225172 (if available)

No data available for Orthologs for ENSG00000225172 Gene

Paralogs for ENSG00000225172 Gene

No data available for Paralogs for ENSG00000225172 Gene

Variants for ENSG00000225172 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225172 Gene

Disorders for ENSG00000225172 Gene

Additional Disease Information for ENSG00000225172

No disorders were found for ENSG00000225172 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000225172 Gene

Publications for ENSG00000225172 Gene

No publications were found for ENSG00000225172 Gene.

No data available for Mastermind for ENSG00000225172 Gene

Products for ENSG00000225172 Gene

Sources for ENSG00000225172 Gene