Aliases for ENSG00000225148 Gene

Subcategory (RNA class) for ENSG00000225148 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000225148 Gene

  • Novel Transcript 5
  • NONHSAG044996.2 91
  • HSALNG0053897 164
  • Lnc-CITED2-2 165
  • AL050338.1 5

External Ids for ENSG00000225148 Gene

Previous GeneCards Identifiers for ENSG00000225148 Gene

  • GC06M140177

Summaries for ENSG00000225148 Gene

GeneCards Summary for ENSG00000225148 Gene

ENSG00000225148 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000225148 include Astrocytoma.

Additional gene information for ENSG00000225148 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225148 Gene

Genomics for ENSG00000225148 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000225148 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J139881 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -5.8 -5768 3.7 CTCF RAD21 TRIM22 SCRT2 ZBTB20 ZNF184 JUND ESR1 JUN FOS ENSG00000225148 lnc-CITED2-7 lnc-HECA-7 CITED2
GH06J139880 Enhancer 0.8 Ensembl ENCODE 0.7 -2.6 -2616 0.4 SP1 CTBP1 YY1 ZNF217 MBD2 ESR1 JUND RAD21 NCOA3 HNF4A ENSG00000225148 lnc-CITED2-7 lnc-HECA-7 CITED2
GH06J139886 Enhancer 1.2 VISTA ENCODE CraniofacialAtlas dbSUPER 0.4 -11.3 -11345 3.8 TEAD4 KDM1A POLR2A RAD21 EZH2 YY1 SMARCA4 HNF4A SP1 CHD2 ENSG00000225148 lnc-CITED2-7 lnc-HECA-7 CITED2
GH06J139851 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +23.3 23342 5.9 GATAD2A PRDM10 FOXA1 SP1 GABPA CEBPA ZNF10 CEBPB FOXA2 ZNF138 FILNC1 ENSG00000236013 ENSG00000225148 lnc-HECA-7 CITED2
GH06J139838 Promoter/Enhancer 1.5 EPDnew FANTOM5 Ensembl ENCODE 0.3 +37.6 37609 1.6 ATF7 REST PKNOX1 HMBOX1 ZSCAN5C ATF2 FOSL1 RFX5 SPI1 RXRA FILNC1 lnc-HECA-7 ENSG00000225148 CITED2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225148 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000225148 Gene

Genomic Locations for ENSG00000225148 Gene
chr6:139,856,104-139,877,391
(GRCh38/hg38)
Size:
21,288 bases
Orientation:
Minus strand
chr6:140,177,241-140,198,528
(GRCh37/hg19)
Size:
21,288 bases
Orientation:
Minus strand

Genomic View for ENSG00000225148 Gene

Genes around ENSG00000225148 on UCSC Golden Path with GeneCards custom track
ENSG00000225148 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000225148 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225148 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225148 Gene

Proteins for ENSG00000225148 Gene

Post-translational modifications for ENSG00000225148 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225148 Gene

Domains & Families for ENSG00000225148 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225148 Gene

Function for ENSG00000225148 Gene

Phenotypes From GWAS Catalog for ENSG00000225148 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225148 Gene

Localization for ENSG00000225148 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225148 Gene

Pathways & Interactions for ENSG00000225148 Gene

PathCards logo

SuperPathways for ENSG00000225148 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225148 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000225148 Gene

Drugs & Compounds for ENSG00000225148 Gene

No Compound Related Data Available

Transcripts for ENSG00000225148 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000225148 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000019C7AB_9606 lncRNA 786 4

Ensembl: ENST00000445585 (view in UCSC) ,

LncBook: HSALNT0114203,

LNCipedia: lnc-CITED2-2:1,

NONCODE: NONHSAT115261.2,

ENSG00000225148 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225148 Gene

No ASD Table

Relevant External Links for ENSG00000225148 Gene

GeneLoc Exon Structure for
ENSG00000225148

No data available for mRNA/cDNA for ENSG00000225148 Gene

Expression for ENSG00000225148 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000225148 Gene

genes like me logo Genes that share expression patterns with ENSG00000225148: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225148 Gene

Orthologs for ENSG00000225148 Gene

Evolution for ENSG00000225148 Gene

ENSEMBL:
Gene Tree for ENSG00000225148 (if available)
TreeFam:
Gene Tree for ENSG00000225148 (if available)

No data available for Orthologs for ENSG00000225148 Gene

Paralogs for ENSG00000225148 Gene

No data available for Paralogs for ENSG00000225148 Gene

Variants for ENSG00000225148 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225148 Gene

Disorders for ENSG00000225148 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000225148 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000225148: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225148 Gene

Publications for ENSG00000225148 Gene

No publications were found for ENSG00000225148 Gene.

No data available for Mastermind for ENSG00000225148 Gene

Products for ENSG00000225148 Gene

Sources for ENSG00000225148 Gene