Aliases for ENSG00000225085 Gene

Subcategory (RNA class) for ENSG00000225085 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000225085 Gene

  • Novel Transcript 5
  • Lnc-SPATA31D1-4 170
  • HSALNG0072223 169
  • NONHSAG052666 94
  • HSALNG0072227 169
  • AL162726.1 5

External Ids for ENSG00000225085 Gene

Previous GeneCards Identifiers for ENSG00000225085 Gene

  • GC09P085020

Summaries for ENSG00000225085 Gene

GeneCards Summary for ENSG00000225085 Gene

ENSG00000225085 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000225085 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000225085 Gene

Genomics for ENSG00000225085 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000225085 Gene

Promoters and enhancers for ENSG00000225085 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J082404 Enhancer 0.3 Ensembl 750.6 +0.0 12 0.4 RCOR1 ENSG00000225085 lnc-SPATA31D1-8 ENSG00000228430 LOC105376107
GH09J082923 Enhancer 1.1 Ensembl ENCODE 14.6 +518.7 518713 2.2 FOXK2 CTBP1 ZNF362 ZNF280D BCL6B NCOA3 SP7 ZSCAN21 CREB1 PKNOX1 ENSG00000232749 MTCO3P40 ENSG00000228123 ENSG00000225085 ENSG00000235377 DDX10P2 SPATA31D3 SPATA31D4 SPATA31D2P ENSG00000267559
GH09J082363 Enhancer 0.7 VISTA ENCODE 0.3 -41.4 -41400 0.9 PKNOX1 POLR2A RCOR1 piR-31199-379 ENSG00000225085 ENSG00000228430 LOC105376107
GH09J082382 Enhancer 0.5 Ensembl ENCODE 0.3 -22.2 -22168 1 EZH2 RUNX3 ENSG00000225085 piR-31199-379 ENSG00000228430 LOC105376107
GH09J082369 Enhancer 0.6 Ensembl 0.3 -35.5 -35487 0.2 FOXA1 SP1 RXRA FOXA2 ATF3 ZBTB33 JUND FOXP1 RAD21 HNF4A piR-31199-379 ENSG00000225085 ENSG00000228430 LOC105376107
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000225085 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000225085 Gene

Genomic Locations for ENSG00000225085 Gene
chr9:82,405,188-82,406,239
(GRCh38/hg38)
Size:
1,052 bases
Orientation:
Plus strand
chr9:85,020,103-85,021,154
(GRCh37/hg19)
Size:
1,052 bases
Orientation:
Plus strand

Genomic View for ENSG00000225085 Gene

Genes around ENSG00000225085 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000225085 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000225085 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000225085 Gene

Proteins for ENSG00000225085 Gene

Post-translational modifications for ENSG00000225085 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000225085 Gene

Domains & Families for ENSG00000225085 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000225085 Gene

Function for ENSG00000225085 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000225085 Gene

Localization for ENSG00000225085 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000225085 Gene

Pathways & Interactions for ENSG00000225085 Gene

PathCards logo

SuperPathways for ENSG00000225085 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000225085 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000225085 Gene

Drugs & Compounds for ENSG00000225085 Gene

No Compound Related Data Available

Transcripts for ENSG00000225085 Gene

mRNA/cDNA for ENSG00000225085 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(37) RNACentral transcripts :
(11) LncBook transcripts :
(35) LNCipedia transcripts :
(17) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000225085 Gene

No ASD Table

Relevant External Links for ENSG00000225085 Gene

GeneLoc Exon Structure for
ENSG00000225085

Expression for ENSG00000225085 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000225085 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000225085 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with ENSG00000225085: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000225085 Gene

Orthologs for ENSG00000225085 Gene

Evolution for ENSG00000225085 Gene

ENSEMBL:
Gene Tree for ENSG00000225085 (if available)
TreeFam:
Gene Tree for ENSG00000225085 (if available)

No data available for Orthologs for ENSG00000225085 Gene

Paralogs for ENSG00000225085 Gene

No data available for Paralogs for ENSG00000225085 Gene

Variants for ENSG00000225085 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000225085 Gene

Disorders for ENSG00000225085 Gene

No disorders were found for ENSG00000225085 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000225085 Gene

Publications for ENSG00000225085 Gene

No publications were found for ENSG00000225085 Gene.

No data available for External Links for ENSG00000225085 Gene

Products for ENSG00000225085 Gene

Sources for ENSG00000225085 Gene