Aliases for ENSG00000224984 Gene

Subcategory (RNA class) for ENSG00000224984 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000224984 Gene

  • Novel Transcript 5
  • Lnc-HMGCLL1-1 168
  • HSALNG0050736 167
  • NONHSAG043982 92
  • AL512363.1 5

External Ids for ENSG00000224984 Gene

Previous GeneCards Identifiers for ENSG00000224984 Gene

  • GC06M054704

Summaries for ENSG00000224984 Gene

GeneCards Summary for ENSG00000224984 Gene

ENSG00000224984 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000224984 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000224984 Gene

Genomics for ENSG00000224984 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000224984 Gene

Promoters and enhancers for ENSG00000224984 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J054845 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 22.6 -7.1 -7063 4.8 ZNF217 ZFX POLR2A ZBTB10 CLOCK ZNF423 ZBTB26 KLF4 ZEB1 ZNF341 FAM83B ENSG00000224984 ENSG00000261116
GH06J054877 Enhancer 1.3 Ensembl ENCODE dbSUPER 26.3 -38.3 -38338 2.8 ZSCAN5C ZNF639 ZNF10 ZIC2 ZNF423 ZNF623 TRIM28 ZNF510 KLF7 CUX1 ENSG00000224984 FAM83B TINAG ENSG00000261116
GH06J054873 Enhancer 1.1 Ensembl ENCODE dbSUPER 27.8 -33.8 -33846 3.4 KLF4 CUX1 EP300 CTBP1 OSR2 WT1 MBD2 FOS CEBPB GATA3 ENSG00000224984 FAM83B RNU6-1023P ENSG00000261116
GH06J054801 Enhancer 1 Ensembl ENCODE 24 +38.2 38191 2.7 EP300 ZSCAN5C JUND FOS ZNF639 ZNF10 REST ZNF623 ZNF510 ATF2 lnc-HMGCLL1-4 ENSG00000224984 FAM83B
GH06J054891 Enhancer 0.9 Ensembl ENCODE dbSUPER 20.2 -51.7 -51749 2.7 USF1 FOS ZNF263 NFE2 MAFK NFE2L2 MAFF JUND ZNF660 BACH1 ENSG00000224984 FAM83B ENSG00000261116
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000224984 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000224984 Gene

Genomic Locations for ENSG00000224984 Gene
chr6:54,840,118-54,840,855
(GRCh38/hg38)
Size:
738 bases
Orientation:
Minus strand
chr6:54,704,916-54,705,653
(GRCh37/hg19)
Size:
738 bases
Orientation:
Minus strand

Genomic View for ENSG00000224984 Gene

Genes around ENSG00000224984 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000224984 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000224984 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000224984 Gene

Proteins for ENSG00000224984 Gene

Post-translational modifications for ENSG00000224984 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000224984 Gene

Domains & Families for ENSG00000224984 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000224984 Gene

Function for ENSG00000224984 Gene

Phenotypes From GWAS Catalog for ENSG00000224984 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000224984 Gene

Localization for ENSG00000224984 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000224984 Gene

Pathways & Interactions for ENSG00000224984 Gene

PathCards logo

SuperPathways for ENSG00000224984 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000224984 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000224984 Gene

Drugs & Compounds for ENSG00000224984 Gene

No Compound Related Data Available

Transcripts for ENSG00000224984 Gene

mRNA/cDNA for ENSG00000224984 Gene

7 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000224984 Gene

No ASD Table

Relevant External Links for ENSG00000224984 Gene

GeneLoc Exon Structure for
ENSG00000224984

Expression for ENSG00000224984 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000224984 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000224984 Gene

This gene is overexpressed in Esophagus - Mucosa (x9.2), Skin - Sun Exposed (Lower leg) (x6.3), Colon - Transverse (x5.8), Skin - Not Sun Exposed (Suprapubic) (x5.6), and Cervix - Ectocervix (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000224984: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000224984 Gene

Orthologs for ENSG00000224984 Gene

Evolution for ENSG00000224984 Gene

ENSEMBL:
Gene Tree for ENSG00000224984 (if available)
TreeFam:
Gene Tree for ENSG00000224984 (if available)

No data available for Orthologs for ENSG00000224984 Gene

Paralogs for ENSG00000224984 Gene

No data available for Paralogs for ENSG00000224984 Gene

Variants for ENSG00000224984 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000224984 Gene

Disorders for ENSG00000224984 Gene

No disorders were found for ENSG00000224984 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000224984 Gene

Publications for ENSG00000224984 Gene

No publications were found for ENSG00000224984 Gene.

No data available for Mastermind for ENSG00000224984 Gene

Products for ENSG00000224984 Gene

Sources for ENSG00000224984 Gene