Aliases for ENSG00000224810 Gene

Subcategory (RNA class) for ENSG00000224810 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000224810 Gene

  • Novel Transcript (LOC149157) 5
  • NONHSAG003655.2 91
  • HSALNG0008891 164
  • Lnc-ZNF648-1 165
  • AL355482.1 5

External Ids for ENSG00000224810 Gene

Previous GeneCards Identifiers for ENSG00000224810 Gene

  • GC01M182031

Summaries for ENSG00000224810 Gene

GeneCards Summary for ENSG00000224810 Gene

ENSG00000224810 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000224810 include Astrocytoma.

Additional gene information for ENSG00000224810 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000224810 Gene

Genomics for ENSG00000224810 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000224810 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J182069 Promoter 0.8 Ensembl 616.8 +0.2 152 0.2 CTCF PRDM10 UBTF MYC PCBP1 ZFHX2 RAD21 ZNF335 ZNF143 ZHX1 ENSG00000224810 ZNF648 piR-42926 CACNA1E
GH01J182028 Promoter/Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas 7.8 +39.6 39614 1.9 SP1 CTCF HNRNPL PRDM10 REST ZNF692 POLR2A TARDBP FOXA1 LARP7 lnc-CACNA1E-6 lnc-ZNF648-6 ZNF648 ENSG00000224810 GLUL CACNA1E
GH01J182243 Promoter/Enhancer 1.1 EPDnew ENCODE 6.9 -175.4 -175363 1.8 FOXA1 TCF12 NRF1 CTBP1 ESRRA PKNOX1 ZNF217 TRIM24 NCOR1 GATAD2B LINC01344 RNU6-152P RPL18P2 GLUL ENSG00000224810 piR-57965-002 lnc-RGSL1-6 ZNF648
GH01J182120 Enhancer 1.3 Ensembl ENCODE dbSUPER 4.5 -51.9 -51948 3.2 GATAD2A PRDM10 ZNF629 TFE3 NFKBIZ ZNF692 RCOR2 ZIC2 POLR2A RXRB LOC107985233 RNU6-152P RPL18P2 ENSG00000224810 ENSG00000232309 ZNF648 LINC01344 GLUL
GH01J182061 Promoter 0.9 EPDnew Ensembl 5.5 +7.8 7752 0.6 ZNF335 MCM7 ZNF48 CTCF ZNF648 ENSG00000224810 piR-42926 CACNA1E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000224810 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000224810 Gene

Genomic Locations for ENSG00000224810 Gene
chr1:182,062,677-182,069,253
(GRCh38/hg38)
Size:
6,577 bases
Orientation:
Minus strand
chr1:182,031,812-182,038,388
(GRCh37/hg19)
Size:
6,577 bases
Orientation:
Minus strand

Genomic View for ENSG00000224810 Gene

Genes around ENSG00000224810 on UCSC Golden Path with GeneCards custom track
ENSG00000224810 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000224810 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000224810 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000224810 Gene

Proteins for ENSG00000224810 Gene

Post-translational modifications for ENSG00000224810 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000224810 Gene

Domains & Families for ENSG00000224810 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000224810 Gene

Function for ENSG00000224810 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000224810 Gene

Localization for ENSG00000224810 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000224810 Gene

Pathways & Interactions for ENSG00000224810 Gene

PathCards logo

SuperPathways for ENSG00000224810 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000224810 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000224810 Gene

Drugs & Compounds for ENSG00000224810 Gene

No Compound Related Data Available

Transcripts for ENSG00000224810 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000224810 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000535D87_9606 lncRNA 2463 4

Ensembl: ENST00000411509 (view in UCSC) ,

LncBook: HSALNT0018398,

LNCipedia: lnc-ZNF648-1:1, lnc-ZNF648-1:2,

NONCODE: NONHSAT008303.2,

ENSG00000224810 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000224810 Gene

No ASD Table

Relevant External Links for ENSG00000224810 Gene

GeneLoc Exon Structure for
ENSG00000224810

No data available for mRNA/cDNA for ENSG00000224810 Gene

Expression for ENSG00000224810 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000224810 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000224810 Gene

This gene is overexpressed in Ovary (x8.8), Pituitary (x5.0), and Liver (x4.3).
genes like me logo Genes that share expression patterns with ENSG00000224810: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000224810 Gene

Orthologs for ENSG00000224810 Gene

Evolution for ENSG00000224810 Gene

ENSEMBL:
Gene Tree for ENSG00000224810 (if available)
TreeFam:
Gene Tree for ENSG00000224810 (if available)

No data available for Orthologs for ENSG00000224810 Gene

Paralogs for ENSG00000224810 Gene

No data available for Paralogs for ENSG00000224810 Gene

Variants for ENSG00000224810 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000224810 Gene

Disorders for ENSG00000224810 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000224810 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000224810: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000224810 Gene

Publications for ENSG00000224810 Gene

No publications were found for ENSG00000224810 Gene.

No data available for Mastermind for ENSG00000224810 Gene

Products for ENSG00000224810 Gene

Sources for ENSG00000224810 Gene