ENSG00000224635 Gene (RNA Gene)

 

GC20M038406
GIFtS:
7
See more...

Aliases for ENSG00000224635 Gene

Subcategory (RNA class) for ENSG00000224635 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000224635 Gene

  • Novel Transcript 5
  • NONHSAG031748.2 91
  • AL391095.2 5
  • SNHG17 165

External Ids for ENSG00000224635 Gene

Previous GeneCards Identifiers for ENSG00000224635 Gene

  • GC20M037034

Summaries for ENSG00000224635 Gene

GeneCards Summary for ENSG00000224635 Gene

ENSG00000224635 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000224635 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000224635 Gene

Genomics for ENSG00000224635 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000224635 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J038418 Enhancer 0.8 Ensembl ENCODE 600.7 -1.9 -1904 0.6 POLR2A PRDM1 RBFOX2 KLF9 ZNF138 RBM22 SCRT1 SUPT5H SSRP1 PAF1 ENSG00000224635 ENSG00000275401 RF00017-3584 SNHG17 RALGAPB LBP
GH20J038416 Enhancer 0.2 Ensembl 610.3 -0.2 -204 0.4 ENSG00000224635 RF00017-3584 SNHG17 RALGAPB LBP
GH20J038433 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas 54 -17.7 -17703 3.8 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF TEAD4 PRDM10 REST ZNF629 SNHG17 HSALNG0129984 SNORA71D RALGAPB ACTR5 ENSG00000224635 TTI1 SNORA71C RN7SKP173 SNORA71A
GH20J038139 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 21.1 +260.8 260807 33.6 ARHGAP35 CEBPG HNRNPL CREB1 GATAD2A CTCF ATF7 TEAD4 YBX1 PRDM10 TGM2 RALGAPB ACTR5 RN7SKP173 SNHG17 TTI1 SNORA71A SNORA71C DHX35 RPN2
GH20J038446 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas 20.1 -30.6 -30643 2.9 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 TFE3 LEF1 IKZF1 SNHG11 SNORA60 SNORA71E SNHG17 ACTR5 ENSG00000224635 RALGAPB RN7SKP173 TTI1 CTNNBL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000224635 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000224635 Gene

Genomic Locations for ENSG00000224635 Gene
chr20:38,404,893-38,416,797
(GRCh38/hg38)
Size:
11,905 bases
Orientation:
Minus strand
chr20:37,034,658-37,045,444
(GRCh37/hg19)
Size:
10,787 bases
Orientation:
Minus strand

Genomic View for ENSG00000224635 Gene

Genes around ENSG00000224635 on UCSC Golden Path with GeneCards custom track
ENSG00000224635 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000224635 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000224635 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000224635 Gene

Proteins for ENSG00000224635 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000224635 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000224635 Gene

Domains & Families for ENSG00000224635 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000224635 Gene

Function for ENSG00000224635 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000224635 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000224635 Gene

Localization for ENSG00000224635 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000224635 Gene

Pathways & Interactions for ENSG00000224635 Gene

PathCards logo

SuperPathways for ENSG00000224635 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000224635 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000224635 Gene

Drugs & Compounds for ENSG00000224635 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000224635 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000224635 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF0124_9606 lncRNA 2746 1

Ensembl: ENST00000422519 (view in UCSC) ,

URS000077255B_9606 lncRNA 2004 2

LNCipedia: SNHG17:26,

NONCODE: NONHSAT079651.2,

URS0000D5C2A6_9606 lncRNA 2002 1

LNCipedia: SNHG17:25,

ENSG00000224635 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000224635 Gene

No ASD Table

Relevant External Links for ENSG00000224635 Gene

GeneLoc Exon Structure for
ENSG00000224635

No data available for mRNA/cDNA for ENSG00000224635 Gene

Expression for ENSG00000224635 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000224635 Gene

mRNA expression in normal human tissues for ENSG00000224635 Gene
mRNA expression by GTEx for ENSG00000224635 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000224635 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x4.7) and Brain - Cerebellum (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000224635: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000224635 Gene

Orthologs for ENSG00000224635 Gene

Evolution for ENSG00000224635 Gene

ENSEMBL:
Gene Tree for ENSG00000224635 (if available)
TreeFam:
Gene Tree for ENSG00000224635 (if available)

No data available for Orthologs for ENSG00000224635 Gene

Paralogs for ENSG00000224635 Gene

No data available for Paralogs for ENSG00000224635 Gene

Variants for ENSG00000224635 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000224635 Gene

Disorders for ENSG00000224635 Gene

No disorders were found for ENSG00000224635 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000224635 Gene

Publications for ENSG00000224635 Gene

No publications were found for ENSG00000224635 Gene.

No data available for Mastermind for ENSG00000224635 Gene

Products for ENSG00000224635 Gene

Sources for ENSG00000224635 Gene