Aliases for ENSG00000224621 Gene

Subcategory (RNA class) for ENSG00000224621 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000224621 Gene

  • Novel Transcript 5
  • HSALNG0001147 169
  • NONHSAG000464 94
  • HSALNG0001150 169
  • NONHSAG000462 94
  • Lnc-CLCNKB-1 170
  • AL451042.1 5

External Ids for ENSG00000224621 Gene

Previous GeneCards Identifiers for ENSG00000224621 Gene

  • GC01P016485

Summaries for ENSG00000224621 Gene

GeneCards Summary for ENSG00000224621 Gene

ENSG00000224621 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000224621 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000224621 Gene

Genomics for ENSG00000224621 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000224621 Gene

Promoters and enhancers for ENSG00000224621 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J016348 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 28.3 +191.7 191705 5.5 ZNF785 ZBTB40 CTCF ZBTB6 RBPJ SMARCE1 POLR2A CREB1 RUNX1 ZNF362 SZRD1 FBXO42 lnc-SZRD1-4 ARHGEF19 ENSG00000237938 RPL22P3 ENSG00000178715 ZBTB17 ENSG00000224621 CROCC
GH01J016012 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 28.2 -142.3 -142322 9.9 GTF3C2 RBPJ SMARCE1 MIXL1 CC2D1A ELF1 HLF L3MBTL2 DACH1 TEAD4 HSPB7 CLCNKA lnc-HSPB7-2 lnc-SRARP-2 ENSG00000237938 ENSG00000178715 SPEN ARHGEF19 ENSG00000224621 RPL22P3
GH01J016211 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 31.1 +52.9 52925 2.4 POU5F1 SP1 IKZF1 GLIS2 ZIC2 POLR2A ZNF10 HDAC2 DPF2 NFIB ARHGEF19 ENSG00000224621 ENSG00000237938 MFAP2 SZRD1 RPL22P3 CPLANE2 ENSG00000178715 FBLIM1 FAM131C
GH01J016115 Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 32.1 -39.8 -39766 9.8 ZNF785 ZBTB6 SMARCE1 TCF7L2 CREB1 MYC HLF L3MBTL2 MAX ZNF121 lnc-EPHA2-1 lnc-EPHA2-2 lnc-EPHA2-3 SPATA21 ENSG00000224621 ZBTB17 NECAP2 HSPB7 ARHGEF19 ENSG00000237938
GH01J015829 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 20 -325.4 -325430 8.9 SIN3A ZNF24 SP1 ZBTB40 ZBTB6 LCORL FOXA1 MLX SMARCE1 RBPJ SPEN lnc-SPEN-3 lnc-SPEN-4 ENSG00000237938 SZRD1 RPL22P3 CROCC ZBTB17 ARHGEF19 FBLIM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000224621 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000224621 Gene

Genomic Locations for ENSG00000224621 Gene
chr1:16,159,266-16,161,883
(GRCh38/hg38)
Size:
2,618 bases
Orientation:
Plus strand
chr1:16,485,761-16,488,378
(GRCh37/hg19)
Size:
2,618 bases
Orientation:
Plus strand

Genomic View for ENSG00000224621 Gene

Genes around ENSG00000224621 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000224621 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000224621 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000224621 Gene

Proteins for ENSG00000224621 Gene

Post-translational modifications for ENSG00000224621 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000224621 Gene

Domains & Families for ENSG00000224621 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000224621 Gene

Function for ENSG00000224621 Gene

Phenotypes From GWAS Catalog for ENSG00000224621 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000224621 Gene

Localization for ENSG00000224621 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000224621 Gene

Pathways & Interactions for ENSG00000224621 Gene

PathCards logo

SuperPathways for ENSG00000224621 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000224621 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000224621 Gene

Drugs & Compounds for ENSG00000224621 Gene

No Compound Related Data Available

Transcripts for ENSG00000224621 Gene

mRNA/cDNA for ENSG00000224621 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(13) RNACentral transcripts :
(10) LNCipedia transcripts :
(5) LncBook transcripts :
(5) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000224621 Gene

No ASD Table

Relevant External Links for ENSG00000224621 Gene

GeneLoc Exon Structure for
ENSG00000224621

Expression for ENSG00000224621 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000224621 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000224621 Gene

This gene is overexpressed in Esophagus - Mucosa (x7.9) and Minor Salivary Gland (x4.8).
genes like me logo Genes that share expression patterns with ENSG00000224621: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000224621 Gene

Orthologs for ENSG00000224621 Gene

Evolution for ENSG00000224621 Gene

ENSEMBL:
Gene Tree for ENSG00000224621 (if available)
TreeFam:
Gene Tree for ENSG00000224621 (if available)

No data available for Orthologs for ENSG00000224621 Gene

Paralogs for ENSG00000224621 Gene

No data available for Paralogs for ENSG00000224621 Gene

Variants for ENSG00000224621 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000224621 Gene

Disorders for ENSG00000224621 Gene

No disorders were found for ENSG00000224621 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000224621 Gene

Publications for ENSG00000224621 Gene

No publications were found for ENSG00000224621 Gene.

No data available for External Links for ENSG00000224621 Gene

Products for ENSG00000224621 Gene

Sources for ENSG00000224621 Gene