Aliases for ENSG00000224549 Gene

Data sources for ENSG00000224549 Gene:

RNA type for ENSG00000224549 Gene

lncRNA

Aliases for ENSG00000224549 Gene

External Ids for ENSG00000224549 Gene

Summaries for ENSG00000224549 Gene

GeneCards Summary for ENSG00000224549 Gene

ENSG00000224549 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000224549 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000224549 Gene

Genomics for ENSG00000224549 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000224549 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J022684 Enhancer 0.8 Ensembl ENCODE 12.3 -83.7 -83740 1.7 CEBPB FEZF1 EP300 STAT3 ZNF189 INSM2 ZSCAN23 ZNF24 JUND ZNF362 LINC01239 ENSG00000224549 piR-61580-630 lnc-DMRTA1-10 LOC107987054 DMRTA1 ENSG00000284418
GH09J022208 Enhancer 0.9 Ensembl ENCODE 5.3 -556.3 -556273 5 JUND CEBPA CEBPB FEZF1 MAX EP300 PRDM1 RFX5 ZNF585B STAT3 KLHL9 ENSG00000265194 ENSG00000224549 HSALNG0070392-001 HSALNG0070392-002 lnc-CDKN2B-4 ENSG00000236921 LINC01239 CDKN2B CDKN2B-AS1
GH09J022773 Enhancer 0.2 Ensembl 17.2 +6.4 6427 0.4 ENSG00000224549 piR-33905-090 DMRTA1 LINC01239 ENSG00000284418
GH09J022793 Enhancer 0.2 Ensembl 13.5 +25.2 25227 0.4 ENSG00000224549 piR-33905-090 DMRTA1 ENSG00000284418 LINC01239
GH09J022207 Enhancer 0.4 Ensembl 4.7 -559.9 -559873 0.6 FEZF1 TCF7L2 PKNOX1 ZNF660 DMRTA1 ENSG00000224549 lnc-CDKN2B-4 HSALNG0070392-001 ENSG00000236921 LINC01239 CDKN2B CDKN2B-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000224549 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000224549 Gene

Latest Assembly
chr9:22,767,174-22,768,316
(GRCh38/hg38)
Size:
1,143 bases
Orientation:
Plus strand

Previous Assembly
chr9:22,767,174-22,768,315
(GRCh37/hg19 by Ensembl)
Size:
1,142 bases
Orientation:
Plus strand

Genomic View for ENSG00000224549 Gene

Genes around ENSG00000224549 on UCSC Golden Path with GeneCards custom track
ENSG00000224549 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000224549 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000224549 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000224549 Gene

Proteins for ENSG00000224549 Gene

Post-translational modifications for ENSG00000224549 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000224549 Gene

Domains & Families for ENSG00000224549 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000224549 Gene

Function for ENSG00000224549 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000224549 Gene

Localization for ENSG00000224549 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000224549 Gene

Pathways & Interactions for ENSG00000224549 Gene

PathCards logo

SuperPathways for ENSG00000224549 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000224549 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000224549 Gene

Drugs & Compounds for ENSG00000224549 Gene

No Compound Related Data Available

Transcripts for ENSG00000224549 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000224549 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003D9B8C_9606 lncRNA 449 3

Ensembl: ENST00000448570 (view in UCSC) ,

LNCipedia: LINC01239:7,

NONCODE: NONHSAT130450.2,

URS00008B37BD_9606 lncRNA 1381 2

LNCipedia: LINC01239:6,

NONCODE: NONHSAT130449.2,

URS00008BEE95_9606 lncRNA 513 2

LNCipedia: LINC01239:4,

NONCODE: NONHSAT130443.2,

URS00009B563E_9606 lncRNA 447 2

LncBook: HSALNT0147507,

NONCODE: NONHSAT219322.1,

URS0000D5D8AA_9606 lncRNA 2355 1

LNCipedia: LINC01239:11,

ENSG00000224549 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000224549 Gene

No ASD Table

Relevant External Links for ENSG00000224549 Gene

GeneLoc Exon Structure for
ENSG00000224549

No data available for mRNA/cDNA for ENSG00000224549 Gene

Expression for ENSG00000224549 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000224549 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000224549 Gene

This gene is overexpressed in Adipose - Subcutaneous (x9.8) and Breast - Mammary Tissue (x5.6).
genes like me logo Genes that share expression patterns with ENSG00000224549: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000224549 Gene

Orthologs for ENSG00000224549 Gene

Evolution for ENSG00000224549 Gene

ENSEMBL:
Gene Tree for ENSG00000224549 (if available)
TreeFam:
Gene Tree for ENSG00000224549 (if available)

No data available for Orthologs for ENSG00000224549 Gene

Paralogs for ENSG00000224549 Gene

No data available for Paralogs for ENSG00000224549 Gene

Variants for ENSG00000224549 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000224549 Gene

Disorders for ENSG00000224549 Gene

No disorders were found for ENSG00000224549 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000224549 Gene

Publications for ENSG00000224549 Gene

No publications were found for ENSG00000224549 Gene.

No data available for Mastermind for ENSG00000224549 Gene

Products for ENSG00000224549 Gene

Sources for ENSG00000224549 Gene