Aliases for ENSG00000224269 Gene

Subcategory (RNA class) for ENSG00000224269 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000224269 Gene

  • Novel Transcript 5
  • NONHSAG032786.2 91
  • HSALNG0132957 164
  • AP000697.1 5
  • Lnc-HLCS-1 165

External Ids for ENSG00000224269 Gene

Previous GeneCards Identifiers for ENSG00000224269 Gene

  • GC21M038071

Summaries for ENSG00000224269 Gene

GeneCards Summary for ENSG00000224269 Gene

ENSG00000224269 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000224269 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000224269 Gene

Genomics for ENSG00000224269 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000224269 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J036697 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +0.5 473 7 PRDM10 ZNF629 ZNF512 KDM1A ZNF692 ZNF300 PRDM1 ZIC2 ZSCAN4 RBFOX2 SIM2 ENSG00000224269 LOC107985492 SETD4 ENSG00000242553 RIMKLBP1 TTC3-AS1 TTC3 DSCR9 MORC3
GH21J036730 Enhancer 1 ENCODE dbSUPER 12.2 -29.4 -29370 0.2 GATAD2A TFE3 SOX13 NFKBIZ RCOR2 RXRB IRF2 CEBPA TCF7 FOXA2 ENSG00000224269 SIM2 RF00017-3703 HLCS
GH21J036772 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 11.2 -72.0 -72015 1.6 SP1 CEBPB ZNF316 ATF3 YY1 JUND NR2F2 BHLHE40 RAD21 SMAD4 SIM2 ENSG00000224269 RF00017-3704 RF00017-3703 HLCS
GH21J036747 Promoter/Enhancer 0.9 ENCODE CraniofacialAtlas 11.5 -46.2 -46190 0.5 KDM1A CTCF EZH2 GATAD2B NRF1 ZFX EGR1 SMARCA5 SCRT1 RAD21 SIM2 ENSG00000224269 RF00017-3703 RF00017-3704 HLCS
GH21J036660 Enhancer 0.9 Ensembl 11.5 +39.6 39552 1.2 GATAD2A CTCF TFE3 ZNF512 SOX13 IKZF1 RCOR2 JUND PRDM1 RXRB SIM2 ENSG00000224269 CLDN14 ENSG00000231324 LOC105369308
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000224269 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000224269 Gene

Genomic Locations for ENSG00000224269 Gene
chr21:36,642,974-36,701,565
(GRCh38/hg38)
Size:
58,592 bases
Orientation:
Minus strand
chr21:38,071,073-38,073,864
(GRCh37/hg19)
Size:
2,792 bases
Orientation:
Minus strand

Genomic View for ENSG00000224269 Gene

Genes around ENSG00000224269 on UCSC Golden Path with GeneCards custom track
ENSG00000224269 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000224269 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000224269 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000224269 Gene

Proteins for ENSG00000224269 Gene

Post-translational modifications for ENSG00000224269 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000224269 Gene

Domains & Families for ENSG00000224269 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000224269 Gene

Function for ENSG00000224269 Gene

Phenotypes From GWAS Catalog for ENSG00000224269 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000224269 Gene

Localization for ENSG00000224269 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000224269 Gene

Pathways & Interactions for ENSG00000224269 Gene

PathCards logo

SuperPathways for ENSG00000224269 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000224269 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000224269 Gene

Drugs & Compounds for ENSG00000224269 Gene

No Compound Related Data Available

Transcripts for ENSG00000224269 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000224269 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000043CB0B_9606 lncRNA 339 4

Ensembl: ENST00000430607 (view in UCSC) ,

LncBook: HSALNT0273326,

LNCipedia: lnc-HLCS-1:1,

NONCODE: NONHSAT081980.2,

URS00009AEF65_9606 lncRNA 445 1

NONCODE: NONHSAT191448.1,

ENSG00000224269 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000224269 Gene

No ASD Table

Relevant External Links for ENSG00000224269 Gene

GeneLoc Exon Structure for
ENSG00000224269

No data available for mRNA/cDNA for ENSG00000224269 Gene

Expression for ENSG00000224269 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000224269 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000224269 Gene

This gene is overexpressed in Kidney - Cortex (x25.0), Esophagus - Mucosa (x17.1), Prostate (x5.4), and Stomach (x4.1).
genes like me logo Genes that share expression patterns with ENSG00000224269: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000224269 Gene

Orthologs for ENSG00000224269 Gene

Evolution for ENSG00000224269 Gene

ENSEMBL:
Gene Tree for ENSG00000224269 (if available)
TreeFam:
Gene Tree for ENSG00000224269 (if available)

No data available for Orthologs for ENSG00000224269 Gene

Paralogs for ENSG00000224269 Gene

No data available for Paralogs for ENSG00000224269 Gene

Variants for ENSG00000224269 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000224269 Gene

Disorders for ENSG00000224269 Gene

Additional Disease Information for ENSG00000224269

No disorders were found for ENSG00000224269 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000224269 Gene

Publications for ENSG00000224269 Gene

No publications were found for ENSG00000224269 Gene.

No data available for Mastermind for ENSG00000224269 Gene

Products for ENSG00000224269 Gene

Sources for ENSG00000224269 Gene