Aliases for ENSG00000223991 Gene

Data sources for ENSG00000223991 Gene:

Subcategory (RNA class) for ENSG00000223991 Gene

lncRNA

Aliases for ENSG00000223991 Gene

External Ids for ENSG00000223991 Gene

Previous GeneCards Identifiers for ENSG00000223991 Gene

  • GC02M241920

Summaries for ENSG00000223991 Gene

GeneCards Summary for ENSG00000223991 Gene

ENSG00000223991 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000223991 include Glioma Susceptibility 1.

Additional gene information for ENSG00000223991 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223991 Gene

Genomics for ENSG00000223991 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000223991 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J240986 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.1 -1115 1.8 FEZF1 CEBPA ZIC2 CEBPB ZNF341 RXRA GABPB1 MYC ZBTB48 HNF4A ENSG00000223991 SNED1 ENSG00000223374 MTERF4 CROCC2
GH02J240912 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.8 +71.2 71219 6.7 MXD4 ZNF217 CTCF ZIC2 THAP11 TRIM22 MIER3 SMC3 GABPB1 RAD21 MAB21L4 AGXT ENSG00000223991 SNED1 GPC1 RNPEPL1 CROCC2 HSALNG0023624
GH02J240946 Enhancer 0.5 Ensembl 11.8 +39.5 39484 1.8 EBF1 CTBP1 MAZ RFX5 RFX1 ZFHX2 KLF9 KLF4 ENSG00000223991 UICLM ENSG00000229996 CROCC2 AGXT KIF1A HSALNG0023628 HSALNG0023627 SNED1
GH02J240983 Enhancer 0.8 Ensembl dbSUPER 0.7 +2.5 2484 1.4 CTCF ZIC2 SMC3 RARA YY1 NRF1 EZH2 SCRT1 RAD21 HDAC2 SNED1 ENSG00000223991 UICLM CROCC2
GH02J240990 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -5.5 -5516 3 IKZF1 ELF1 FOXA2 RXRA YY1 JUND FOSL1 MYC MAX PKNOX1 SNED1 PPP1R7 ENSG00000223991 lnc-MTERF4-6 CROCC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223991 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000223991 Gene

Latest Assembly
chr2:240,981,514-240,986,385
(GRCh38/hg38)
Size:
4,872 bases
Orientation:
Minus strand

Previous Assembly
chr2:241,920,932-241,925,489
(GRCh37/hg19 by Ensembl)
Size:
4,558 bases
Orientation:
Minus strand

Genomic View for ENSG00000223991 Gene

Genes around ENSG00000223991 on UCSC Golden Path with GeneCards custom track
ENSG00000223991 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000223991 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223991 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223991 Gene

Proteins for ENSG00000223991 Gene

Post-translational modifications for ENSG00000223991 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223991 Gene

Domains & Families for ENSG00000223991 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223991 Gene

Function for ENSG00000223991 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223991 Gene

Localization for ENSG00000223991 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223991 Gene

Pathways & Interactions for ENSG00000223991 Gene

PathCards logo

SuperPathways for ENSG00000223991 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223991 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223991 Gene

Drugs & Compounds for ENSG00000223991 Gene

No Compound Related Data Available

Transcripts for ENSG00000223991 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000223991 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000060F02B_9606 lncRNA 2347 2

Ensembl: ENST00000425110 (view in UCSC) ,

LNCipedia: lnc-C2orf54-2:1,

URS00008BE9B9_9606 lncRNA 2585 2

LNCipedia: lnc-C2orf54-2:2,

NONCODE: NONHSAT077870.2,

URS00009C4705_9606 lncRNA 2345 1

NONCODE: NONHSAT186538.1,

ENSG00000223991 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223991 Gene

No ASD Table

Relevant External Links for ENSG00000223991 Gene

GeneLoc Exon Structure for
ENSG00000223991

No data available for mRNA/cDNA for ENSG00000223991 Gene

Expression for ENSG00000223991 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223991 Gene

genes like me logo Genes that share expression patterns with ENSG00000223991: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223991 Gene

Orthologs for ENSG00000223991 Gene

Evolution for ENSG00000223991 Gene

ENSEMBL:
Gene Tree for ENSG00000223991 (if available)
TreeFam:
Gene Tree for ENSG00000223991 (if available)

No data available for Orthologs for ENSG00000223991 Gene

Paralogs for ENSG00000223991 Gene

No data available for Paralogs for ENSG00000223991 Gene

Variants for ENSG00000223991 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223991 Gene

Disorders for ENSG00000223991 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000223991 Gene - From: LNC

Disorder Aliases PubMed IDs
glioma susceptibility 1
  • glm1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ENSG00000223991

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with ENSG00000223991: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ENSG00000223991 Gene

Publications for ENSG00000223991 Gene

  1. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F … Yang Y (PloS one 2015) 74

No data available for Mastermind for ENSG00000223991 Gene

Products for ENSG00000223991 Gene

Sources for ENSG00000223991 Gene