Aliases for ENSG00000223991 Gene

Subcategory (RNA class) for ENSG00000223991 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000223991 Gene

  • Novel Transcript 5
  • NONHSAG031003 92
  • Lnc-C2orf54-2 168
  • AC104809.1 5

External Ids for ENSG00000223991 Gene

Previous GeneCards Identifiers for ENSG00000223991 Gene

  • GC02M241920

Summaries for ENSG00000223991 Gene

GeneCards Summary for ENSG00000223991 Gene

ENSG00000223991 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000223991 include Astrocytoma.

Additional gene information for ENSG00000223991 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223991 Gene

Genomics for ENSG00000223991 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000223991 Gene

Promoters and enhancers for ENSG00000223991 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J240986 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -1.3 -1329 2.4 ZIC2 ZNF341 CEBPB REST GABPB1 STAT3 ZBTB48 POLR2A FEZF1 RXRA ENSG00000223991 SNED1 MTERF4 LINC01237 CROCC2
GH02J240987 Enhancer 0.7 Ensembl dbSUPER 500.7 +0.2 171 0.2 ZIC2 ZFHX2 HNF4A MAX YY1 TAF1 HNRNPL RXRA SP1 ENSG00000223991 LOC200772 CROCC2
GH02J240912 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.8 +70.9 70906 6.7 ZNF217 CTCF TCF12 FOS ZIC2 ZNF423 GABPA ZBTB26 RFX1 RAD21 MAB21L4 AGXT ENSG00000223991 SNED1 GPC1 RNPEPL1 CROCC2 RF00017-3477
GH02J240946 Enhancer 0.5 Ensembl 11.8 +39.2 39171 1.8 RFX1 KLF4 CTBP1 POLR2A ZFHX2 KLF9 EBF1 MAZ RFX5 ENSG00000223991 LOC200772 ENSG00000229996 CROCC2 AGXT KIF1A RF00017-3477
GH02J240983 Enhancer 0.9 Ensembl dbSUPER 0.7 +2.4 2371 1 CTCF ZIC2 GABPA ZBTB26 SMC3 ZNF263 YY1 NANOG ZFHX2 EZH2 ENSG00000223991 LOC200772 CROCC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223991 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000223991 Gene

Genomic Locations for ENSG00000223991 Gene
chr2:240,981,515-240,986,072
(GRCh38/hg38)
Size:
4,558 bases
Orientation:
Minus strand
chr2:241,920,932-241,925,514
(GRCh37/hg19)
Size:
4,583 bases
Orientation:
Minus strand

Genomic View for ENSG00000223991 Gene

Genes around ENSG00000223991 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000223991 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223991 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223991 Gene

Proteins for ENSG00000223991 Gene

Post-translational modifications for ENSG00000223991 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223991 Gene

Domains & Families for ENSG00000223991 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223991 Gene

Function for ENSG00000223991 Gene

Phenotypes From GWAS Catalog for ENSG00000223991 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223991 Gene

Localization for ENSG00000223991 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223991 Gene

Pathways & Interactions for ENSG00000223991 Gene

PathCards logo

SuperPathways for ENSG00000223991 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000223991 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223991 Gene

Drugs & Compounds for ENSG00000223991 Gene

No Compound Related Data Available

Transcripts for ENSG00000223991 Gene

mRNA/cDNA for ENSG00000223991 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223991 Gene

No ASD Table

Relevant External Links for ENSG00000223991 Gene

GeneLoc Exon Structure for
ENSG00000223991

Expression for ENSG00000223991 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223991 Gene

genes like me logo Genes that share expression patterns with ENSG00000223991: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223991 Gene

Orthologs for ENSG00000223991 Gene

Evolution for ENSG00000223991 Gene

ENSEMBL:
Gene Tree for ENSG00000223991 (if available)
TreeFam:
Gene Tree for ENSG00000223991 (if available)

No data available for Orthologs for ENSG00000223991 Gene

Paralogs for ENSG00000223991 Gene

No data available for Paralogs for ENSG00000223991 Gene

Variants for ENSG00000223991 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223991 Gene

Disorders for ENSG00000223991 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000223991 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000223991: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000223991 Gene

Publications for ENSG00000223991 Gene

No publications were found for ENSG00000223991 Gene.

No data available for Mastermind for ENSG00000223991 Gene

Products for ENSG00000223991 Gene

Sources for ENSG00000223991 Gene