Aliases for ENSG00000223989 Gene

Subcategory (RNA class) for ENSG00000223989 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000223989 Gene

  • Novel Transcript 5
  • HSALNG0000728 169
  • NONHSAG000327 94
  • Lnc-NMNAT1-3 170
  • AL357140.1 5

External Ids for ENSG00000223989 Gene

Previous GeneCards Identifiers for ENSG00000223989 Gene

  • GC01P009908

Summaries for ENSG00000223989 Gene

GeneCards Summary for ENSG00000223989 Gene

ENSG00000223989 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000223989 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223989 Gene

Genomics for ENSG00000223989 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000223989 Gene

Promoters and enhancers for ENSG00000223989 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J009847 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 750.6 +1.3 1282 3.6 SP1 ZIC2 ZSCAN4 RFX1 ZNF316 ZSCAN5C NFIC NRF1 VEZF1 PRDM10 ENSG00000223989 LOC105376717 CTNNBIP1 LZIC
GH01J009848 Enhancer 0.5 dbSUPER 750.6 -1.0 -986 0.4 ZNF580 BCOR ZNF335 GLIS1 ZMYM3 KDM1A ENSG00000223989 CTNNBIP1 ENSG00000280113
GH01J009821 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.7 -24.2 -24152 5.5 SIN3A ZBTB40 POLR2A CC2D1A HLF MNT ZKSCAN8 ZNF148 ZBTB33 NKRF CLSTN1 ENSG00000223989 ENSG00000280113 piR-32214-008
GH01J009792 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12 -45.8 -45817 21 CTCF CTBP1 ZNF362 ZNF701 ZNF121 TEAD4 CBFA2T2 MLLT1 SP7 ZSCAN21 CLSTN1 NMNAT1 ENSG00000223989 PIK3CD-AS2 CTNNBIP1 ENSG00000228150 LZIC RN7SKP269 MIR34AHG UBE4B
GH01J009877 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE dbSUPER 12.3 +29.5 29483 2 ZNF217 MNT SMARCC1 CTBP1 ZSCAN4 POLR2A RFX5 SIN3A ELF1 FOS CLSTN1 CTNNBIP1 ENSG00000223989 ENSG00000228150 LZIC NMNAT1 RN7SKP269 piR-42072 piR-56341-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223989 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000223989 Gene

Genomic Locations for ENSG00000223989 Gene
chr1:9,848,318-9,850,154
(GRCh38/hg38)
Size:
1,837 bases
Orientation:
Plus strand
chr1:9,908,376-9,910,212
(GRCh37/hg19)
Size:
1,837 bases
Orientation:
Plus strand

Genomic View for ENSG00000223989 Gene

Genes around ENSG00000223989 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000223989 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223989 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223989 Gene

Proteins for ENSG00000223989 Gene

Post-translational modifications for ENSG00000223989 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223989 Gene

Domains & Families for ENSG00000223989 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223989 Gene

Function for ENSG00000223989 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223989 Gene

Localization for ENSG00000223989 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223989 Gene

Pathways & Interactions for ENSG00000223989 Gene

PathCards logo

SuperPathways for ENSG00000223989 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223989 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000223989 Gene

Drugs & Compounds for ENSG00000223989 Gene

No Compound Related Data Available

Transcripts for ENSG00000223989 Gene

mRNA/cDNA for ENSG00000223989 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(1) LncBook transcripts :
(1) LNCipedia transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223989 Gene

No ASD Table

Relevant External Links for ENSG00000223989 Gene

GeneLoc Exon Structure for
ENSG00000223989

Expression for ENSG00000223989 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000223989 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000223989 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x8.4) and Skin - Not Sun Exposed (Suprapubic) (x5.8).
genes like me logo Genes that share expression patterns with ENSG00000223989: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223989 Gene

Orthologs for ENSG00000223989 Gene

Evolution for ENSG00000223989 Gene

ENSEMBL:
Gene Tree for ENSG00000223989 (if available)
TreeFam:
Gene Tree for ENSG00000223989 (if available)

No data available for Orthologs for ENSG00000223989 Gene

Paralogs for ENSG00000223989 Gene

No data available for Paralogs for ENSG00000223989 Gene

Variants for ENSG00000223989 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223989 Gene

Disorders for ENSG00000223989 Gene

No disorders were found for ENSG00000223989 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000223989 Gene

Publications for ENSG00000223989 Gene

No publications were found for ENSG00000223989 Gene.

No data available for External Links for ENSG00000223989 Gene

Products for ENSG00000223989 Gene

Sources for ENSG00000223989 Gene