Aliases for ENSG00000223947 Gene

Data sources for ENSG00000223947 Gene:

Subcategory (RNA class) for ENSG00000223947 Gene

lncRNA

Aliases for ENSG00000223947 Gene

External Ids for ENSG00000223947 Gene

Previous GeneCards Identifiers for ENSG00000223947 Gene

  • GC02M101610

Summaries for ENSG00000223947 Gene

GeneCards Summary for ENSG00000223947 Gene

ENSG00000223947 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000223947 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223947 Gene

Genomics for ENSG00000223947 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000223947 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J101001 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 258.7 -1.1 -1102 4 SP1 MXD4 FEZF1 CEBPA NR2C1 MNT DEK BRCA1 SMAD5 ETS1 ENSG00000223947 RPL31 NPAS2-AS1 CNOT11 NPAS2 HSALNG0017341 TBC1D8
GH02J101026 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 16.7 -24.1 -24056 1.4 RBM22 BCL6 SSRP1 NPAS2-AS1 ENSG00000223947 RPL31 NPAS2 LOC105373510 RF00017-3281 TBC1D8
GH02J101038 Enhancer 1.1 Ensembl ENCODE 11 -39.4 -39435 6.6 CEBPA CTCF HOMEZ THAP11 CEBPB ARNT ZNF395 REST GABPA VEZF1 RPL31 ENSG00000223947 TBC1D8 SNORD89 RF00017-3281 LOC105373510
GH02J101080 Enhancer 0.8 Ensembl ENCODE dbSUPER 10.1 -79.2 -79187 1.7 RBM22 CEBPG CEBPB HLF MAFK ZNF121 SIN3A NPAS2-AS1 ENSG00000223947 RPL31 NPAS2 TBC1D8-AS1 TBC1D8 HSALNG0017345 BBIP1P1
GH02J100603 Enhancer 0.7 FANTOM5 Ensembl ENCODE 11.5 +398.2 398244 2 PRDM10 NRF1 POLR2A LINC01849 PDCL3 ENSG00000223947 RPL31 RF00017-3279 NPAS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223947 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000223947 Gene

Latest Assembly
chr2:100,978,454-101,002,245
(GRCh38/hg38)
Size:
23,792 bases
Orientation:
Minus strand

Previous Assembly
chr2:101,610,138-101,618,706
(GRCh37/hg19 by Ensembl)
Size:
8,569 bases
Orientation:
Minus strand

Genomic View for ENSG00000223947 Gene

Genes around ENSG00000223947 on UCSC Golden Path with GeneCards custom track
ENSG00000223947 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000223947 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223947 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223947 Gene

Proteins for ENSG00000223947 Gene

Post-translational modifications for ENSG00000223947 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223947 Gene

Domains & Families for ENSG00000223947 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223947 Gene

Function for ENSG00000223947 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223947 Gene

Localization for ENSG00000223947 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223947 Gene

Pathways & Interactions for ENSG00000223947 Gene

PathCards logo

SuperPathways for ENSG00000223947 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223947 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223947 Gene

Drugs & Compounds for ENSG00000223947 Gene

No Compound Related Data Available

Transcripts for ENSG00000223947 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000223947 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000030B22D_9606 lncRNA 3487 3

Ensembl: ENST00000452364 (view in UCSC) ,

LNCipedia: lnc-TBC1D8-7:1,

NONCODE: NONHSAT072802.2,

URS0000D57A16_9606 lncRNA 6712 2

LncBook: HSALNT0036518,

LNCipedia: lnc-TBC1D8-7:3,

URS00008BC569_9606 lncRNA 2096 2

LNCipedia: lnc-TBC1D8-7:2,

NONCODE: NONHSAT072803.2,

URS0001BF210C_9606 lncRNA 6712 1

LncBook: HSALNT0036518,

URS0001BDC1B0_9606 lncRNA 5886 1

LncBook: HSALNT0036519,

ENSG00000223947 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223947 Gene

No ASD Table

Relevant External Links for ENSG00000223947 Gene

GeneLoc Exon Structure for
ENSG00000223947

No data available for mRNA/cDNA for ENSG00000223947 Gene

Expression for ENSG00000223947 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223947 Gene

genes like me logo Genes that share expression patterns with ENSG00000223947: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223947 Gene

Orthologs for ENSG00000223947 Gene

Evolution for ENSG00000223947 Gene

ENSEMBL:
Gene Tree for ENSG00000223947 (if available)
TreeFam:
Gene Tree for ENSG00000223947 (if available)

No data available for Orthologs for ENSG00000223947 Gene

Paralogs for ENSG00000223947 Gene

No data available for Paralogs for ENSG00000223947 Gene

Variants for ENSG00000223947 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223947 Gene

Disorders for ENSG00000223947 Gene

No disorders were found for ENSG00000223947 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000223947 Gene

Publications for ENSG00000223947 Gene

No publications were found for ENSG00000223947 Gene.

No data available for Mastermind for ENSG00000223947 Gene

Products for ENSG00000223947 Gene

Sources for ENSG00000223947 Gene