Aliases for ENSG00000223942 Gene

Subcategory (RNA class) for ENSG00000223942 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000223942 Gene

  • Novel Transcript 5
  • NONHSAG045380.2 91
  • HSALNG0055052 164
  • AL590302.1 5
  • Lnc-TBXT-2 165

External Ids for ENSG00000223942 Gene

Previous GeneCards Identifiers for ENSG00000223942 Gene

  • GC06M166186

Summaries for ENSG00000223942 Gene

GeneCards Summary for ENSG00000223942 Gene

ENSG00000223942 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000223942 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223942 Gene

Genomics for ENSG00000223942 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000223942 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J165774 Enhancer 0.8 Ensembl ENCODE 600.7 +0.7 700 3 POLR2A SP1 ZNF600 SCRT2 RFX1 OSR2 YY1 MYNN GABPA NR2F2 ENSG00000223942 RNU6-730P LINC00473 PDE10A LOC105378114 piR-44878-036 ENSG00000236627 lnc-TBXT-4 lnc-PDE10A-2 C6orf118
GH06J165765 Enhancer 0.5 Ensembl 0.4 +8.5 8500 5.4 CEBPB CEBPG JUN ATF2 RAD21 SPI1 CTCF RNU6-730P piR-44878-036 ENSG00000223942 ENSG00000236627 lnc-TBXT-4 LINC00473 PDE10A lnc-PDE10A-2 C6orf118
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223942 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000223942 Gene

Genomic Locations for ENSG00000223942 Gene
chr6:165,773,038-165,776,801
(GRCh38/hg38)
Size:
3,764 bases
Orientation:
Minus strand
chr6:166,186,689-166,188,674
(GRCh37/hg19)
Size:
1,986 bases
Orientation:
Minus strand

Genomic View for ENSG00000223942 Gene

Genes around ENSG00000223942 on UCSC Golden Path with GeneCards custom track
ENSG00000223942 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000223942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223942 Gene

Proteins for ENSG00000223942 Gene

Post-translational modifications for ENSG00000223942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223942 Gene

Domains & Families for ENSG00000223942 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223942 Gene

Function for ENSG00000223942 Gene

Phenotypes From GWAS Catalog for ENSG00000223942 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223942 Gene

Localization for ENSG00000223942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223942 Gene

Pathways & Interactions for ENSG00000223942 Gene

PathCards logo

SuperPathways for ENSG00000223942 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223942 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223942 Gene

Drugs & Compounds for ENSG00000223942 Gene

No Compound Related Data Available

Transcripts for ENSG00000223942 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000223942 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005F2534_9606 lncRNA 359 2

Ensembl: ENST00000431017 (view in UCSC) ,

LNCipedia: lnc-TBXT-2:3,

URS0000EEF830_9606 lncRNA 607 1

Ensembl: ENST00000670033 (view in UCSC) ,

URS00008BDEBE_9606 lncRNA 448 3

LncBook: HSALNT0116539,

LNCipedia: lnc-TBXT-2:1,

NONCODE: NONHSAT116010.2,

URS00008BB53F_9606 lncRNA 690 2

LNCipedia: lnc-TBXT-2:2,

NONCODE: NONHSAT116009.2,

URS00009C1548_9606 lncRNA 359 2

LncBook: HSALNT0116540,

NONCODE: NONHSAT210016.1,

ENSG00000223942 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223942 Gene

No ASD Table

Relevant External Links for ENSG00000223942 Gene

GeneLoc Exon Structure for
ENSG00000223942

No data available for mRNA/cDNA for ENSG00000223942 Gene

Expression for ENSG00000223942 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223942 Gene

genes like me logo Genes that share expression patterns with ENSG00000223942: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223942 Gene

Orthologs for ENSG00000223942 Gene

Evolution for ENSG00000223942 Gene

ENSEMBL:
Gene Tree for ENSG00000223942 (if available)
TreeFam:
Gene Tree for ENSG00000223942 (if available)

No data available for Orthologs for ENSG00000223942 Gene

Paralogs for ENSG00000223942 Gene

No data available for Paralogs for ENSG00000223942 Gene

Variants for ENSG00000223942 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223942 Gene

Disorders for ENSG00000223942 Gene

Additional Disease Information for ENSG00000223942

No disorders were found for ENSG00000223942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000223942 Gene

Publications for ENSG00000223942 Gene

No publications were found for ENSG00000223942 Gene.

No data available for Mastermind for ENSG00000223942 Gene

Products for ENSG00000223942 Gene

Sources for ENSG00000223942 Gene