Aliases for ENSG00000223911 Gene

Subcategory (RNA class) for ENSG00000223911 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000223911 Gene

  • Novel Transcript 5
  • NONHSAG029495.2 91
  • HSALNG0019473 164
  • AC009480.1 5
  • Lnc-ORC4-1 165

External Ids for ENSG00000223911 Gene

Previous GeneCards Identifiers for ENSG00000223911 Gene

  • GC02M148656

Summaries for ENSG00000223911 Gene

GeneCards Summary for ENSG00000223911 Gene

ENSG00000223911 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000223911 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223911 Gene

Genomics for ENSG00000223911 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000223911 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J147903 Enhancer 0.4 Ensembl 600.7 -1.2 -1244 1.2 ZNF316 MAFK FOS SMARCE1 ENSG00000223911 ORC4 lnc-MMADHC-12 ACVR2A MBD5
GH02J147910 Enhancer 0.8 FANTOM5 Ensembl 0.4 -9.4 -9444 4.4 CTCF REST RAD21 TRIM22 SMC3 NFIC NFIB ZNF654 ZBTB40 ZNF660 ORC4 ENSG00000223911 lnc-MMADHC-12 ACVR2A MBD5
GH02J147916 Enhancer 0.5 Ensembl 0.4 -14.4 -14444 2 TRIM24 CEBPG SPI1 ATF4 HLF ORC4 ACVR2A ENSG00000223911 lnc-MMADHC-12 MBD5
GH02J147883 Enhancer 0.5 Ensembl 0.4 +18.7 18657 2.2 FOXA2 ZBTB25 ZNF792 PRDM6 ZNF644 ORC4 ACVR2A RNU6-1275P RF00026-584 ENSG00000223911 MBD5
GH02J147879 Enhancer 0.5 Ensembl 0.4 +22.0 21956 1.6 ZSCAN4 TCF7L2 ZXDB OSR2 ZNF580 ZNF18 PKNOX1 ACVR2A ORC4 RF00026-584 RNU6-1275P ENSG00000223911 MBD5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223911 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000223911 Gene

Genomic Locations for ENSG00000223911 Gene
chr2:147,860,005-147,902,957
(GRCh38/hg38)
Size:
42,953 bases
Orientation:
Minus strand
chr2:148,656,970-148,660,525
(GRCh37/hg19)
Size:
3,556 bases
Orientation:
Minus strand

Genomic View for ENSG00000223911 Gene

Genes around ENSG00000223911 on UCSC Golden Path with GeneCards custom track
ENSG00000223911 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000223911 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223911 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223911 Gene

Proteins for ENSG00000223911 Gene

Post-translational modifications for ENSG00000223911 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223911 Gene

Domains & Families for ENSG00000223911 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223911 Gene

Function for ENSG00000223911 Gene

Phenotypes From GWAS Catalog for ENSG00000223911 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223911 Gene

Localization for ENSG00000223911 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223911 Gene

Pathways & Interactions for ENSG00000223911 Gene

PathCards logo

SuperPathways for ENSG00000223911 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223911 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223911 Gene

Drugs & Compounds for ENSG00000223911 Gene

No Compound Related Data Available

Transcripts for ENSG00000223911 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000223911 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000027EE40_9606 lncRNA 412 4

Ensembl: ENST00000402410 (view in UCSC) ,

LncBook: HSALNT0041224,

LNCipedia: lnc-ORC4-1:1,

NONCODE: NONHSAT074864.2,

URS00009B6DA9_9606 lncRNA 540 2

LncBook: HSALNT0041222,

NONCODE: NONHSAT185646.1,

ENSG00000223911 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223911 Gene

No ASD Table

Relevant External Links for ENSG00000223911 Gene

GeneLoc Exon Structure for
ENSG00000223911

No data available for mRNA/cDNA for ENSG00000223911 Gene

Expression for ENSG00000223911 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223911 Gene

genes like me logo Genes that share expression patterns with ENSG00000223911: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223911 Gene

Orthologs for ENSG00000223911 Gene

Evolution for ENSG00000223911 Gene

ENSEMBL:
Gene Tree for ENSG00000223911 (if available)
TreeFam:
Gene Tree for ENSG00000223911 (if available)

No data available for Orthologs for ENSG00000223911 Gene

Paralogs for ENSG00000223911 Gene

No data available for Paralogs for ENSG00000223911 Gene

Variants for ENSG00000223911 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223911 Gene

Disorders for ENSG00000223911 Gene

No disorders were found for ENSG00000223911 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000223911 Gene

Publications for ENSG00000223911 Gene

No publications were found for ENSG00000223911 Gene.

No data available for Mastermind for ENSG00000223911 Gene

Products for ENSG00000223911 Gene

Sources for ENSG00000223911 Gene