Aliases for ENSG00000223859 Gene

Subcategory (RNA class) for ENSG00000223859 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000223859 Gene

  • Novel Transcript 5
  • NONHSAG028033.2 91
  • HSALNG0015619 164
  • HSALNG0015623 164
  • Lnc-ETAA1-7 165
  • AC007403.1 5

External Ids for ENSG00000223859 Gene

Previous GeneCards Identifiers for ENSG00000223859 Gene

  • GC02P067267

Summaries for ENSG00000223859 Gene

GeneCards Summary for ENSG00000223859 Gene

ENSG00000223859 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000223859 include Lung Cancer.

Additional gene information for ENSG00000223859 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223859 Gene

Genomics for ENSG00000223859 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000223859 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J067039 Enhancer 0.6 Ensembl ENCODE 600.7 -0.7 -722 0.8 ATF3 MAFK HNF4G ARID3A ENSG00000223859 LOC105374785 lnc-C1D-14 lnc-ETAA1-16 ETAA1 MEIS1
GH02J067040 Enhancer 0.5 ENCODE 600.7 -0.1 -142 0.2 SOX13 FOXA2 ATF3 JUND HNF4A HNF4G ARID3A JUN ENSG00000223859 LOC105374785 lnc-C1D-14 lnc-ETAA1-16 ETAA1 MEIS1
GH02J067041 Enhancer 0.5 ENCODE 600.7 +0.7 717 0.7 FOXA2 ATF2 FEZF1 ZNF664 BCL6B ENSG00000223859 LINC01828 lnc-C1D-14 lnc-ETAA1-16 ETAA1 MEIS1
GH02J067037 Enhancer 0.9 Ensembl ENCODE 0.7 -2.3 -2301 0.7 GATAD2A SP1 ZNF561 SOX13 ESR1 FOXA2 OSR2 YY1 FOXP1 TBX3 LINC01829 ENSG00000223859 LOC105374785 lnc-C1D-14 lnc-ETAA1-16 ETAA1 MEIS1
GH02J067054 Enhancer 1.2 VISTA UCNEbase Ensembl 0.4 +14.2 14221 1.3 SOX13 ESR1 FOXA2 STAT1 SOX5 ZNF644 PKNOX1 LINC01828 ENSG00000223859 lnc-C1D-14 lnc-ETAA1-16 ETAA1 MEIS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223859 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000223859 Gene

Genomic Locations for ENSG00000223859 Gene
chr2:67,040,546-67,041,966
(GRCh38/hg38)
Size:
1,421 bases
Orientation:
Plus strand
chr2:67,267,678-67,269,098
(GRCh37/hg19)
Size:
1,421 bases
Orientation:
Plus strand

Genomic View for ENSG00000223859 Gene

Genes around ENSG00000223859 on UCSC Golden Path with GeneCards custom track
ENSG00000223859 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000223859 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223859 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223859 Gene

Proteins for ENSG00000223859 Gene

Post-translational modifications for ENSG00000223859 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223859 Gene

Domains & Families for ENSG00000223859 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223859 Gene

Function for ENSG00000223859 Gene

Phenotypes From GWAS Catalog for ENSG00000223859 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223859 Gene

Localization for ENSG00000223859 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223859 Gene

Pathways & Interactions for ENSG00000223859 Gene

PathCards logo

SuperPathways for ENSG00000223859 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223859 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223859 Gene

Drugs & Compounds for ENSG00000223859 Gene

No Compound Related Data Available

Transcripts for ENSG00000223859 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000223859 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003EDDDE_9606 lncRNA 567 4

Ensembl: ENST00000427579 (view in UCSC) ,

LncBook: HSALNT0033121,

LNCipedia: lnc-ETAA1-7:1,

NONCODE: NONHSAT071258.2,

URS00009B77D6_9606 lncRNA 566 2

LncBook: HSALNT0033122,

NONCODE: NONHSAT181943.1,

ENSG00000223859 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223859 Gene

No ASD Table

Relevant External Links for ENSG00000223859 Gene

GeneLoc Exon Structure for
ENSG00000223859

No data available for mRNA/cDNA for ENSG00000223859 Gene

Expression for ENSG00000223859 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223859 Gene

mRNA expression in normal human tissues for ENSG00000223859 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000223859 Gene

This gene is overexpressed in Pancreas (x18.6), Colon - Sigmoid (x5.6), Brain - Cerebellar Hemisphere (x5.6), and Brain - Cerebellum (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000223859: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223859 Gene

Orthologs for ENSG00000223859 Gene

Evolution for ENSG00000223859 Gene

ENSEMBL:
Gene Tree for ENSG00000223859 (if available)
TreeFam:
Gene Tree for ENSG00000223859 (if available)

No data available for Orthologs for ENSG00000223859 Gene

Paralogs for ENSG00000223859 Gene

No data available for Paralogs for ENSG00000223859 Gene

Variants for ENSG00000223859 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223859 Gene

Disorders for ENSG00000223859 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000223859 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000223859: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000223859 Gene

Publications for ENSG00000223859 Gene

No publications were found for ENSG00000223859 Gene.

No data available for Mastermind for ENSG00000223859 Gene

Products for ENSG00000223859 Gene

Sources for ENSG00000223859 Gene