ENSG00000223842 Gene (RNA Gene)

 

GC01M219224
GIFtS:
7
See more...

Aliases for ENSG00000223842 Gene

Subcategory (RNA class) for ENSG00000223842 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000223842 Gene

  • Novel Transcript 5
  • NONHSAG004319.2 91
  • Lnc-ZC3H11B-3 165
  • HSALNG0010639 164
  • AL360093.1 5

External Ids for ENSG00000223842 Gene

Previous GeneCards Identifiers for ENSG00000223842 Gene

  • GC01M219395

Summaries for ENSG00000223842 Gene

GeneCards Summary for ENSG00000223842 Gene

ENSG00000223842 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000223842 include Astrocytoma.

Additional gene information for ENSG00000223842 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223842 Gene

Genomics for ENSG00000223842 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000223842 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J218400 Enhancer 1 Ensembl ENCODE dbSUPER 10.4 +823.4 823386 3 GATAD2A FOXA1 CEBPA SOX13 TCF7 FOXA2 TEAD1 HHEX CREM FOXP1 TGFB2 TGFB2-AS1 LINC02869 ENSG00000223842 RIMKLBP2 lnc-GPATCH2-8 piR-38344-006 LYPLAL1
GH01J219227 Enhancer 0.5 Ensembl 0.7 -2.0 -2003 1 CEBPG CEBPA CEBPB ZBTB33 HLF ZNF644 ENSG00000223842 piR-38051-021 lnc-LYPLAL1-1 LYPLAL1 ZC3H11B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223842 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000223842 Gene

Genomic Locations for ENSG00000223842 Gene
chr1:219,222,248-219,225,498
(GRCh38/hg38)
Size:
3,251 bases
Orientation:
Minus strand
chr1:219,395,590-219,398,839
(GRCh37/hg19)
Size:
3,250 bases
Orientation:
Minus strand

Genomic View for ENSG00000223842 Gene

Genes around ENSG00000223842 on UCSC Golden Path with GeneCards custom track
ENSG00000223842 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000223842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223842 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000223842 Gene

Proteins for ENSG00000223842 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000223842 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223842 Gene

Domains & Families for ENSG00000223842 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223842 Gene

Function for ENSG00000223842 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000223842 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223842 Gene

Localization for ENSG00000223842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223842 Gene

Pathways & Interactions for ENSG00000223842 Gene

PathCards logo

SuperPathways for ENSG00000223842 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223842 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223842 Gene

Drugs & Compounds for ENSG00000223842 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000223842 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000223842 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000050808_9606 lncRNA 1126 3

Ensembl: ENST00000420237 (view in UCSC) ,

LNCipedia: lnc-ZC3H11B-3:1,

NONCODE: NONHSAT009548.2,

URS00009AE7B4_9606 lncRNA 1125 2

LncBook: HSALNT0022055,

NONCODE: NONHSAT152962.1,

ENSG00000223842 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223842 Gene

No ASD Table

Relevant External Links for ENSG00000223842 Gene

GeneLoc Exon Structure for
ENSG00000223842

No data available for mRNA/cDNA for ENSG00000223842 Gene

Expression for ENSG00000223842 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223842 Gene

mRNA expression in normal human tissues for ENSG00000223842 Gene
mRNA expression by GTEx for ENSG00000223842 Gene
genes like me logo Genes that share expression patterns with ENSG00000223842: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223842 Gene

Orthologs for ENSG00000223842 Gene

Evolution for ENSG00000223842 Gene

ENSEMBL:
Gene Tree for ENSG00000223842 (if available)
TreeFam:
Gene Tree for ENSG00000223842 (if available)

No data available for Orthologs for ENSG00000223842 Gene

Paralogs for ENSG00000223842 Gene

No data available for Paralogs for ENSG00000223842 Gene

Variants for ENSG00000223842 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223842 Gene

Disorders for ENSG00000223842 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000223842 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ENSG00000223842

Open Targets Platform
genes like me logo Genes that share disorders with ENSG00000223842: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ENSG00000223842 Gene

Publications for ENSG00000223842 Gene

No publications were found for ENSG00000223842 Gene.

No data available for Mastermind for ENSG00000223842 Gene

Products for ENSG00000223842 Gene

Sources for ENSG00000223842 Gene