Aliases for ENSG00000223842 Gene
Quality Score for this RNA gene is
13
Aliases for ENSG00000223842 Gene
- AL360093.1 5
External Ids for ENSG00000223842 Gene
- Ensembl: ENSG00000223842
Previous GeneCards Identifiers for ENSG00000223842 Gene
- GC01M219395
Summaries for ENSG00000223842 Gene
GeneCards Summary for ENSG00000223842 Gene
ENSG00000223842 is an RNA Gene.
Additional gene information for ENSG00000223842 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000223842 Gene
Genomics for ENSG00000223842 Gene
GeneHancer (GH) Regulatory Elements for ENSG00000223842 Gene
Promoters and enhancers for ENSG00000223842 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J218284 | Promoter/Enhancer | 2.1 | EPDnew Ensembl ENCODE | 12.2 | +940.0 | 939987 | 2.2 | CLOCK ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ZNF610 | RRP15 RIMKLBP2 ENSG00000223842 GC01M218293 | |
| GH01J219906 | Enhancer | 1.2 | Ensembl ENCODE | 12.1 | -681.9 | -681949 | 1.4 | HDGF PKNOX1 SMAD1 FOXA2 ARNT YBX1 POLR2B ZNF766 E2F8 ZNF592 | ZC3H11B RPS15AP12 SLC30A10 RIMKLBP2 ENSG00000223842 SNX2P1 GC01P219890 | |
| GH01J219048 | Enhancer | 0.6 | ENCODE | 11.5 | +175.9 | 175902 | 2.2 | ESRRA SUZ12 ZBTB5 CTBP1 NONO ZNF366 ZNF512 ZNF24 PRDM1 | RIMKLBP2 ENSG00000223842 GC01M219069 LINC01710 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around ENSG00000223842 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for ENSG00000223842 Gene
Genomic Locations for ENSG00000223842 Gene
- chr1:219,222,248-219,225,497
- (GRCh38/hg38)
- Size:
- 3,250 bases
- Orientation:
- Minus strand
- chr1:219,395,590-219,398,839
- (GRCh37/hg19)
- Size:
- 3,250 bases
- Orientation:
- Minus strand
Genomic View for ENSG00000223842 Gene
Genes around ENSG00000223842 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1q41 by Ensembl
ENSG00000223842 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for ENSG00000223842 Gene
Proteins for ENSG00000223842 Gene
Post-translational modifications for ENSG00000223842 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for ENSG00000223842
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000223842
- Origene Custom Protein Services for ENSG00000223842
- Search GeneTex for Proteins for ENSG00000223842
No data available for DME Specific Peptides for ENSG00000223842 Gene
Domains & Families for ENSG00000223842 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000223842 Gene
Function for ENSG00000223842 Gene
Phenotypes From GWAS Catalog for ENSG00000223842 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for ENSG00000223842
-
miRNA Products
Inhibitory RNA Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223842 Gene
Localization for ENSG00000223842 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223842 Gene
Transcripts for ENSG00000223842 Gene
mRNA/cDNA for ENSG00000223842 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000420237 1126 bps (uc057pmt.1)
- (1) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for ENSG00000223842
miRNA Products
Inhibitory RNA Products
Relevant External Links for ENSG00000223842 Gene
- GeneLoc Exon Structure for
- ENSG00000223842
Expression for ENSG00000223842 Gene
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223842 Gene
Orthologs for ENSG00000223842 Gene
No data available for Orthologs for ENSG00000223842 Gene
Paralogs for ENSG00000223842 Gene
No data available for Paralogs for ENSG00000223842 Gene
Variants for ENSG00000223842 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223842 Gene
Disorders for ENSG00000223842 Gene
No disorders were found for ENSG00000223842 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000223842 Gene
Publications for ENSG00000223842 Gene
No publications were found for ENSG00000223842 Gene.
Products for ENSG00000223842 Gene
- Browse R&D Systems for Antibodies
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- Browse Human Proteins and Enzymes
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- Browse Proteins and Enzymes
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- Browse Immunoprecipitation Assays
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- Browse Peptides
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000223842
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- Browse CRISPR knockouts for ENSG00000223842
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- Design optimal peptide antigens
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Search GeneTex for Antibodies for ENSG00000223842
- Search GeneTex for Proteins for ENSG00000223842
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for ENSG00000223842
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for ENSG00000223842
- Search GeneCopoeia for miRNA 3'UTR Target clone products for ENSG00000223842
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for ENSG00000223842
Sources for ENSG00000223842 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt