Aliases for ENSG00000223834 Gene

Subcategory (RNA class) for ENSG00000223834 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000223834 Gene

  • Novel Transcript 5
  • HSALNG0077094 169
  • NONHSAG005553 94
  • AL161935.1 5
  • Lnc-ZEB1-1 170

External Ids for ENSG00000223834 Gene

Previous GeneCards Identifiers for ENSG00000223834 Gene

  • GC10P031892

Summaries for ENSG00000223834 Gene

GeneCards Summary for ENSG00000223834 Gene

ENSG00000223834 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000223834 include Astrocytoma.

Additional gene information for ENSG00000223834 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223834 Gene

Genomics for ENSG00000223834 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000223834 Gene

Promoters and enhancers for ENSG00000223834 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J031602 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas 750.6 +0.9 867 3.1 SP1 POLR2A TCF7L2 USF2 L3MBTL2 HDGF MNT ZNF280D ZNF473 MLLT1 ENSG00000223834 ZEB1-AS1 CCDC7 EPC1 MG828470
GH10J031599 Enhancer 0.5 Ensembl 0.6 -2.5 -2461 2.8 HLF CREB1 NFE2 POLR2A FOSL1 FOS ENSG00000223834 piR-59928-017
GH10J031611 Enhancer 0.3 Ensembl 0.4 +9.3 9339 1.2 IKZF1 MG828470 ENSG00000223834 ENSG00000286694 LOC105376484
GH10J031594 Enhancer 0.3 Ensembl 0.4 -8.3 -8261 0.4 POLR2A ENSG00000223834 piR-59928-017
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223834 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000223834 Gene

Genomic Locations for ENSG00000223834 Gene
chr10:31,602,862-31,606,218
(GRCh38/hg38)
Size:
3,357 bases
Orientation:
Plus strand
chr10:31,893,528-31,895,146
(GRCh37/hg19)
Size:
1,619 bases
Orientation:
Plus strand

Genomic View for ENSG00000223834 Gene

Genes around ENSG00000223834 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000223834 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223834 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223834 Gene

Proteins for ENSG00000223834 Gene

Post-translational modifications for ENSG00000223834 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223834 Gene

Domains & Families for ENSG00000223834 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223834 Gene

Function for ENSG00000223834 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223834 Gene

Localization for ENSG00000223834 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223834 Gene

Pathways & Interactions for ENSG00000223834 Gene

PathCards logo

SuperPathways for ENSG00000223834 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223834 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000223834 Gene

Drugs & Compounds for ENSG00000223834 Gene

No Compound Related Data Available

Transcripts for ENSG00000223834 Gene

mRNA/cDNA for ENSG00000223834 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(8) LNCipedia transcripts :
(3) NONCODE transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223834 Gene

No ASD Table

Relevant External Links for ENSG00000223834 Gene

GeneLoc Exon Structure for
ENSG00000223834

Expression for ENSG00000223834 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000223834 Gene

mRNA expression in normal human tissues for ENSG00000223834 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000223834 Gene

This gene is overexpressed in Testis (x4.0).
genes like me logo Genes that share expression patterns with ENSG00000223834: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223834 Gene

Orthologs for ENSG00000223834 Gene

Evolution for ENSG00000223834 Gene

ENSEMBL:
Gene Tree for ENSG00000223834 (if available)
TreeFam:
Gene Tree for ENSG00000223834 (if available)

No data available for Orthologs for ENSG00000223834 Gene

Paralogs for ENSG00000223834 Gene

No data available for Paralogs for ENSG00000223834 Gene

Variants for ENSG00000223834 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223834 Gene

Disorders for ENSG00000223834 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ENSG00000223834 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000223834: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000223834 Gene

Publications for ENSG00000223834 Gene

No publications were found for ENSG00000223834 Gene.

No data available for External Links for ENSG00000223834 Gene

Products for ENSG00000223834 Gene

Sources for ENSG00000223834 Gene