Aliases for ENSG00000223808 Gene

Data sources for ENSG00000223808 Gene:

RNA type for ENSG00000223808 Gene

lncRNA

Aliases for ENSG00000223808 Gene

External Ids for ENSG00000223808 Gene

Previous GeneCards Identifiers for ENSG00000223808 Gene

  • GC10P009012
  • GC10P008970

Summaries for ENSG00000223808 Gene

GeneCards Summary for ENSG00000223808 Gene

ENSG00000223808 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000223808 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223808 Gene

Genomics for ENSG00000223808 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000223808 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J008975 Enhancer 0.6 Ensembl 0.3 +32.0 32021 0.6 CUX1 SMARCE1 SCRT1 DPF2 CREB1 FOS MTA1 ZNF592 SREBF1 SCRT2 piR-41525-047 NONHSAG005194.2 ENSG00000223808 LOC101928272 GATA3
GH10J009007 Enhancer 0.6 FANTOM5 Ensembl ENCODE 0.2 +66.2 66157 6.5 GATA3 GATA3-AS1 lnc-GATA3-19-002 lnc-GATA3-19-001 lnc-GATA3-20 ENSG00000223808 lnc-KIN-10 LOC101928272
GH10J008994 Enhancer 0.4 Ensembl 0.3 +47.9 47922 0.4 ATF2 JUND JUN ATF7 HSALNG0076086 lnc-GATA3-19-001 ENSG00000223808 lnc-KIN-10 LOC101928272 GATA3
GH10J009015 Enhancer 0.4 FANTOM5 Ensembl 0.2 +71.7 71722 0.4 GATA3 lnc-GATA3-19-002 lnc-GATA3-20 ENSG00000223808 lnc-KIN-10 LOC101928272
GH10J009016 Enhancer 0.2 FANTOM5 0.2 +73.2 73183 0.3 lnc-GATA3-19-002 lnc-GATA3-20 ENSG00000223808 lnc-KIN-10 LOC101928272 GATA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223808 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000223808 Gene

Latest Assembly
chr10:8,943,879-9,042,414
(GRCh38/hg38)
Size:
98,536 bases
Orientation:
Plus strand

Previous Assembly
chr10:9,012,088-9,015,431
(GRCh37/hg19 by Ensembl)
Size:
3,344 bases
Orientation:
Plus strand

Genomic View for ENSG00000223808 Gene

Genes around ENSG00000223808 on UCSC Golden Path with GeneCards custom track
ENSG00000223808 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000223808 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223808 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223808 Gene

Proteins for ENSG00000223808 Gene

Post-translational modifications for ENSG00000223808 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223808 Gene

Domains & Families for ENSG00000223808 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223808 Gene

Function for ENSG00000223808 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223808 Gene

Localization for ENSG00000223808 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223808 Gene

Pathways & Interactions for ENSG00000223808 Gene

PathCards logo

SuperPathways for ENSG00000223808 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000223808 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223808 Gene

Drugs & Compounds for ENSG00000223808 Gene

No Compound Related Data Available

Transcripts for ENSG00000223808 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000223808 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000F2679_9606 lncRNA 677 3

Ensembl: ENST00000456526 (view in UCSC) ,

LNCipedia: lnc-GATA3-7:1,

NONCODE: NONHSAT011337.2,

URS00008B7B6A_9606 lncRNA 1794 3

LncBook: HSALNT0158719,

LNCipedia: lnc-GATA3-7:2,

NONCODE: NONHSAT011336.2,

URS00008B5192_9606 lncRNA 1491 3

LncBook: HSALNT0158715,

LNCipedia: lnc-GATA3-7:4,

NONCODE: NONHSAT011335.2,

URS0000D5B18E_9606 lncRNA 1740 2

LncBook: HSALNT0158714,

LNCipedia: lnc-GATA3-7:3,

URS0000D58C24_9606 lncRNA 1721 2

LncBook: HSALNT0158721,

LNCipedia: lnc-GATA3-7:6,

ENSG00000223808 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223808 Gene

No ASD Table

Relevant External Links for ENSG00000223808 Gene

GeneLoc Exon Structure for
ENSG00000223808

No data available for mRNA/cDNA for ENSG00000223808 Gene

Expression for ENSG00000223808 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223808 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000223808 Gene

This gene is overexpressed in Testis (x32.4), Skin - Sun Exposed (Lower leg) (x7.5), Skin - Not Sun Exposed (Suprapubic) (x7.3), and Breast - Mammary Tissue (x5.8).
genes like me logo Genes that share expression patterns with ENSG00000223808: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223808 Gene

Orthologs for ENSG00000223808 Gene

Evolution for ENSG00000223808 Gene

ENSEMBL:
Gene Tree for ENSG00000223808 (if available)
TreeFam:
Gene Tree for ENSG00000223808 (if available)

No data available for Orthologs for ENSG00000223808 Gene

Paralogs for ENSG00000223808 Gene

No data available for Paralogs for ENSG00000223808 Gene

Variants for ENSG00000223808 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223808 Gene

Disorders for ENSG00000223808 Gene

Additional Disease Information for ENSG00000223808

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000223808 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000223808 Gene

Publications for ENSG00000223808 Gene

No publications were found for ENSG00000223808 Gene.

No data available for Mastermind for ENSG00000223808 Gene

Products for ENSG00000223808 Gene

Sources for ENSG00000223808 Gene