Aliases for ENSG00000223727 Gene

Subcategory (RNA class) for ENSG00000223727 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000223727 Gene

  • Novel Transcript 5
  • NONHSAG034305 92
  • HSALNG0023845 167
  • AC034195.1 5
  • Lnc-CRBN-1 168

External Ids for ENSG00000223727 Gene

Summaries for ENSG00000223727 Gene

GeneCards Summary for ENSG00000223727 Gene

ENSG00000223727 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000223727 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000223727 Gene

Genomics for ENSG00000223727 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000223727 Gene

Promoters and enhancers for ENSG00000223727 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J003625 Enhancer 0.4 ENCODE 500.7 +1.6 1644 0.1 GATA3 FOXA1 SCRT1 SCRT2 ENSG00000223727 LRRN1 SUMF1 RF00994-626
GH03J003627 Enhancer 0.3 Ensembl 500.7 +0.1 95 0.4 CTCF ENSG00000223727 LRRN1 SUMF1 RF00994-626
GH03J003630 Enhancer 0.5 Ensembl 0.7 -4.7 -4656 4.1 FOS ESR1 SPI1 GATA3 NFIB FOXA1 LRRN1 SUMF1 ENSG00000223727 piR-61580-429
GH03J003646 Enhancer 0.8 Ensembl ENCODE 0.4 -19.5 -19505 2 REST CREB1 NBN NR2C1 IKZF1 NR2F1 NFATC3 TBX21 ATF2 ATF7 ENSG00000223727 piR-61580-429
GH03J003636 Enhancer 0.6 ENCODE 0.4 -9.7 -9719 1.8 ZNF217 RFX1 CTBP1 ESR1 JUND ELF1 GATA3 STAT3 FOXA1 DPF2 ENSG00000223727 piR-61580-429
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000223727 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000223727 Gene

Genomic Locations for ENSG00000223727 Gene
chr3:3,250,687-3,627,296
(GRCh38/hg38)
Size:
376,610 bases
Orientation:
Minus strand
chr3:3,292,371-3,668,980
(GRCh37/hg19)
Size:
376,610 bases
Orientation:
Minus strand

Genomic View for ENSG00000223727 Gene

Genes around ENSG00000223727 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000223727 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000223727 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000223727 Gene

Proteins for ENSG00000223727 Gene

Post-translational modifications for ENSG00000223727 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000223727 Gene

Domains & Families for ENSG00000223727 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000223727 Gene

Function for ENSG00000223727 Gene

Phenotypes From GWAS Catalog for ENSG00000223727 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000223727 Gene

Localization for ENSG00000223727 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000223727 Gene

Pathways & Interactions for ENSG00000223727 Gene

PathCards logo

SuperPathways for ENSG00000223727 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000223727 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000223727 Gene

Drugs & Compounds for ENSG00000223727 Gene

No Compound Related Data Available

Transcripts for ENSG00000223727 Gene

mRNA/cDNA for ENSG00000223727 Gene

4 RNACentral transcripts :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000223727 Gene

No ASD Table

Relevant External Links for ENSG00000223727 Gene

GeneLoc Exon Structure for
ENSG00000223727

Expression for ENSG00000223727 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000223727 Gene

genes like me logo Genes that share expression patterns with ENSG00000223727: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000223727 Gene

Orthologs for ENSG00000223727 Gene

Evolution for ENSG00000223727 Gene

ENSEMBL:
Gene Tree for ENSG00000223727 (if available)
TreeFam:
Gene Tree for ENSG00000223727 (if available)

No data available for Orthologs for ENSG00000223727 Gene

Paralogs for ENSG00000223727 Gene

No data available for Paralogs for ENSG00000223727 Gene

Variants for ENSG00000223727 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000223727 Gene

Disorders for ENSG00000223727 Gene

No disorders were found for ENSG00000223727 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000223727 Gene

Publications for ENSG00000223727 Gene

No publications were found for ENSG00000223727 Gene.

No data available for Mastermind for ENSG00000223727 Gene

Products for ENSG00000223727 Gene

Sources for ENSG00000223727 Gene